PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW02725

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 661aa MW: 72926 Da PI: 6.9094

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW02725	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	255	275	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg OIW02725 255 PCPEFRK-GACQKGDSCEYAHG 275 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MRCGSKNTLS TSNQVMESEF QKILLELSAS DDVEAFKREV EEKGLEVNEA GFWYGRRIGS 60 KKMGYEKRTP VMIASLFGST NVVKYIIEFG MVDVNKVCGS DRVTALHCAV AGGSESSLEI 120 VKLLLDAGAD ADCLDAIGNK PVNLVAPGFN PSSNSRRKAL DLSLRGGKGD QLLYETEEMP 180 SEKKEGADKK EYPVDISLPD INNCVYGTDE FRMYSFKVKP CSRAYSHDWT ECPFVHPGEN 240 ARRRDPRKYP YSCVPCPEFR KGACQKGDSC EYAHGVFESW LHPAQYRTRL CKDETGCNRK 300 VCFFAHKPEE LRPVYASTGS AMPSPKSYSA SAPDMTLMSP LCLSSSLPMS TVSTPPMSTL 360 AASSPKSGNM WQNQTNLNLS SLQLPSSQLK AALSARDLDF EMELLGLGSP SHACQQQQQQ 420 QLIEEIARIS SPSFRRRMGD LHPTNLDELL ASADASTLSQ LHGLSVQPST STQMQTLNTL 480 QTRQNMNHLR ASYPSNNMPS SPVYKSSPYG FDSSAAVAAA TMNSRSAAFA RRSQSFIDRG 540 AAANHLGLSS PSSPSCRQSS ALSDWGSPTG KLDWGVNEDE LSKLRKSASF GFRNNGVSSP 600 MAQSELVEPD VPWVHSLVRD RSERFGAEKK QQQQQQYDLS KEMLPPWVEQ LYIEQQEQMV 660 A

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MRCGSKNTLS TSNQVMESEF QKILLELSAS DDVEAFKREV EEKGLEVNEA GFWYGRRIGS  60
KKMGYEKRTP VMIASLFGST NVVKYIIEFG MVDVNKVCGS DRVTALHCAV AGGSESSLEI  120
VKLLLDAGAD ADCLDAIGNK PVNLVAPGFN PSSNSRRKAL DLSLRGGKGD QLLYETEEMP  180
SEKKEGADKK EYPVDISLPD INNCVYGTDE FRMYSFKVKP CSRAYSHDWT ECPFVHPGEN  240
ARRRDPRKYP YSCVPCPEFR KGACQKGDSC EYAHGVFESW LHPAQYRTRL CKDETGCNRK  300
VCFFAHKPEE LRPVYASTGS AMPSPKSYSA SAPDMTLMSP LCLSSSLPMS TVSTPPMSTL  360
AASSPKSGNM WQNQTNLNLS SLQLPSSQLK AALSARDLDF EMELLGLGSP SHACQQQQQQ  420
QLIEEIARIS SPSFRRRMGD LHPTNLDELL ASADASTLSQ LHGLSVQPST STQMQTLNTL  480
QTRQNMNHLR ASYPSNNMPS SPVYKSSPYG FDSSAAVAAA TMNSRSAAFA RRSQSFIDRG  540
AAANHLGLSS PSSPSCRQSS ALSDWGSPTG KLDWGVNEDE LSKLRKSASF GFRNNGVSSP  600
MAQSELVEPD VPWVHSLVRD RSERFGAEKK QQQQQQYDLS KEMLPPWVEQ LYIEQQEQMV  660
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW02725