PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW03142

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C2H2

Protein Properties

Length: 514aa MW: 57044.8 Da PI: 8.8391

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW03142	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OIW03142 79 FVCEICNKGFQRDQNLQLHKRGH 101 89******************988 PP
2	zf-C2H2	12.5	0.00046	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + OIW03142 156 WKCEKCSKRYAVQSDWKAHSKIC 178 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MEKGLVVDEN MSNLTSASSE ISASSGARSN TGSLYPQYSS TSTHQEPVLK KKRNLPGHPD 60 PEAEVIALSP KSLIATNRFV CEICNKGFQR DQNLQLHKRG HNLPWKLKQR NSKEPLRKKA 120 YVCPEPTCVH HDPSRALGDL TGIKKHFFRK HGEKNWKCEK CSKRYAVQSD WKAHSKICGT 180 REYKCDCGTI FSRRDSFITH RAFCDALAQE SAIANVTTMN PLMSSHTQLY NHSFQELSLV 240 KREQEYFNNL RPEIPPWLRG EGFHVQTLRP LDFSSTPLLS THYENPNPTT FLPPFQSNIE 300 SFSSSPHMSA TALLQKASQM GATVSKTAPS TATLRPHLLQ QQGHVPECTT ITGYNSSSSM 360 PSSSPLSGSM VIMPSREEIR TVFSYGNKAA ITSANNTIGT DQESSFFHEM MGGGGGNSGT 420 VHNASGFESS SFEEAMRGMF NNPPRDDKNF QELVSKSAQS QFGNKSNKGA NDEITRDFLG 480 LGAFSQRGFF NISGLEHLDS SYGKQNQNQA PWQG

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MEKGLVVDEN MSNLTSASSE ISASSGARSN TGSLYPQYSS TSTHQEPVLK KKRNLPGHPD  60
PEAEVIALSP KSLIATNRFV CEICNKGFQR DQNLQLHKRG HNLPWKLKQR NSKEPLRKKA  120
YVCPEPTCVH HDPSRALGDL TGIKKHFFRK HGEKNWKCEK CSKRYAVQSD WKAHSKICGT  180
REYKCDCGTI FSRRDSFITH RAFCDALAQE SAIANVTTMN PLMSSHTQLY NHSFQELSLV  240
KREQEYFNNL RPEIPPWLRG EGFHVQTLRP LDFSSTPLLS THYENPNPTT FLPPFQSNIE  300
SFSSSPHMSA TALLQKASQM GATVSKTAPS TATLRPHLLQ QQGHVPECTT ITGYNSSSSM  360
PSSSPLSGSM VIMPSREEIR TVFSYGNKAA ITSANNTIGT DQESSFFHEM MGGGGGNSGT  420
VHNASGFESS SFEEAMRGMF NNPPRDDKNF QELVSKSAQS QFGNKSNKGA NDEITRDFLG  480
LGAFSQRGFF NISGLEHLDS SYGKQNQNQA PWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	119	KLKQRNSKEPLRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-114	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIW03142