PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW04135

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 421aa MW: 45881.6 Da PI: 7.8765

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW04135	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	4e-10	55	80	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f+rtG C yG+ C+++H+ OIW04135 55 PGEPDCLYFLRTGMCGYGSACRYNHP 80 5789*********************8 PP
2	zf-CCCH	37.2	5.1e-12	99	123	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ OIW04135 99 QPDCEYFLKTGTCKYGSTCKYHHPR 123 789********************96 PP
3	zf-CCCH	38.3	2.2e-12	144	168	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G CkF+H++ OIW04135 144 ERSCPYYMRTGSCKFGVACKFHHPQ 168 577********************97 PP
4	zf-CCCH	37.1	5.2e-12	276	302	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+f+ tGtCkyG+ Ck++H++ OIW04135 276 PGQPECRYFMSTGTCKYGSDCKYHHPK 302 5789*********************96 PP
5	zf-CCCH	24.5	4.6e-08	320	344	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++ G Ck+G++CkF H+ OIW04135 320 GHAICSYYRLCGVCKFGPTCKFDHP 344 789*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MSENRHPLRN AVSNHSGDNI EGGVDFYGEA VLRLNINDNQ DRDAAAQSIP FPERPGEPDC 60 LYFLRTGMCG YGSACRYNHP ANVSLGIHYG EELPERVGQP DCEYFLKTGT CKYGSTCKYH 120 HPRDRRGAAP VSFNSLGLPM RQEERSCPYY MRTGSCKFGV ACKFHHPQIG ASPVAGSPTS 180 TILPTSGLPY VGGFSAWQLP RMSYLSGQGI QSYVPPFLSS PQGIIPAQNW NTYMGSMSGA 240 ITTGFVGSNF VYDTMNLGEP LLCGGQMISP VLPERPGQPE CRYFMSTGTC KYGSDCKYHH 300 PKERTAQSLM NPVGLPLRPG HAICSYYRLC GVCKFGPTCK FDHPILAIPQ SYGLTSSHAF 360 SVPDTSFINS SRVLSTVQPP NTSISNLSNG KVQHSDTKTT EDSSKQVDST TPDSFPATSK 420 S

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MSENRHPLRN AVSNHSGDNI EGGVDFYGEA VLRLNINDNQ DRDAAAQSIP FPERPGEPDC  60
LYFLRTGMCG YGSACRYNHP ANVSLGIHYG EELPERVGQP DCEYFLKTGT CKYGSTCKYH  120
HPRDRRGAAP VSFNSLGLPM RQEERSCPYY MRTGSCKFGV ACKFHHPQIG ASPVAGSPTS  180
TILPTSGLPY VGGFSAWQLP RMSYLSGQGI QSYVPPFLSS PQGIIPAQNW NTYMGSMSGA  240
ITTGFVGSNF VYDTMNLGEP LLCGGQMISP VLPERPGQPE CRYFMSTGTC KYGSDCKYHH  300
PKERTAQSLM NPVGLPLRPG HAICSYYRLC GVCKFGPTCK FDHPILAIPQ SYGLTSSHAF  360
SVPDTSFINS SRVLSTVQPP NTSISNLSNG KVQHSDTKTT EDSSKQVDST TPDSFPATSK  420
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-112	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW04135