PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW07189

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 426aa MW: 46836.6 Da PI: 7.8918

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW07189	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.5e-11	35	61	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p OIW07189 35 PGEPDCSYYIRTGLCRFGATCRFNHPP 61 5789*********************97 PP
2	zf-CCCH	38.9	1.5e-12	82	106	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OIW07189 82 QPECQYYLKTGTCKFGATCKFHHPR 106 799********************96 PP
3	zf-CCCH	38.6	1.8e-12	128	152	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OIW07189 128 EPECTYYLRTGQCKFGNTCKFHHPQ 152 799********************97 PP
4	zf-CCCH	37.9	2.9e-12	287	313	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ OIW07189 287 PGQPECQFYMKTGDCKFGAVCRFHHPR 313 5789*********************96 PP
5	zf-CCCH	38.1	2.5e-12	333	359	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ OIW07189 333 PGEPLCVFYSRYGICKFGPSCKFDHPM 359 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MEFHPAIHIY QQDALQQMNL TSSETMEAGT YPQRPGEPDC SYYIRTGLCR FGATCRFNHP 60 PNRKLAIATA RMKGEFPERI GQPECQYYLK TGTCKFGATC KFHHPRDQAG MSGRIALNIL 120 GYPLRPNEPE CTYYLRTGQC KFGNTCKFHH PQPSNMMLSL RDSPVYPTAQ SPTTPGPQPY 180 AGGIANWSRT SYIASPRWQG PSSYTPLILP QGVVSVPGWS AYSGQMGSIP TSDNPQQTIG 240 NGQTYGTSRQ DEVANAGTHG AYTQFRSGSV PVGFYALQGE NIFPERPGQP ECQFYMKTGD 300 CKFGAVCRFH HPRERLVPVP DCVLSPIGLP LRPGEPLCVF YSRYGICKFG PSCKFDHPMG 360 IFTYNLSASP STEAPGRRLL GSSSGTAALN LSSEGHAESG SAKPRRLSIS ETRQVPSDDD 420 DIDDDE

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MEFHPAIHIY QQDALQQMNL TSSETMEAGT YPQRPGEPDC SYYIRTGLCR FGATCRFNHP  60
PNRKLAIATA RMKGEFPERI GQPECQYYLK TGTCKFGATC KFHHPRDQAG MSGRIALNIL  120
GYPLRPNEPE CTYYLRTGQC KFGNTCKFHH PQPSNMMLSL RDSPVYPTAQ SPTTPGPQPY  180
AGGIANWSRT SYIASPRWQG PSSYTPLILP QGVVSVPGWS AYSGQMGSIP TSDNPQQTIG  240
NGQTYGTSRQ DEVANAGTHG AYTQFRSGSV PVGFYALQGE NIFPERPGQP ECQFYMKTGD  300
CKFGAVCRFH HPRERLVPVP DCVLSPIGLP LRPGEPLCVF YSRYGICKFG PSCKFDHPMG  360
IFTYNLSASP STEAPGRRLL GSSSGTAALN LSSEGHAESG SAKPRRLSIS ETRQVPSDDD  420
DIDDDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-178	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW07189