PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW08106

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 398aa MW: 43481 Da PI: 7.8838

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW08106	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	115	139	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G++CkF H+ OIW08106 115 GEKDCAHYMLTRTCKFGESCKFDHP 139 7889********************8 PP
2	zf-CCCH	33.2	9.1e-11	165	191	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G+rCkF+H++ OIW08106 165 PGEPDCPYFVKTQRCKFGPRCKFNHPK 191 5789*********************96 PP
3	zf-CCCH	40.1	6.3e-13	214	237	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ OIW08106 214 EVDCPFYMKTGSCKYGSSCRYNHP 237 689********************9 PP
4	zf-CCCH	42.3	1.2e-13	300	323	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+G+rCkF+H+ OIW08106 300 QIECDYYMKTGICKFGERCKFHHP 323 568********************8 PP
5	zf-CCCH	41.6	2e-13	348	371	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tGtCkyG++CkF H+p OIW08106 348 VICPYYLKTGTCKYGPTCKFDHPP 371 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MFFSRHLTDT TSAAASATSF RFPSSASSDV DIAPPGVPSR IPSSTSHLFS QPSPWFSSPS 60 LDLKRSSSQA LYHPTILGIQ NTIGQNEAWY STSPLAKRPR YESGSNLPIY PQRPGEKDCA 120 HYMLTRTCKF GESCKFDHPI WVPEGGIPDW KEVPDVTNET LPERPGEPDC PYFVKTQRCK 180 FGPRCKFNHP KVSSESAGVS DLPDRPSEPP CAGEVDCPFY MKTGSCKYGS SCRYNHPDRT 240 AINPPVAALG PSVLASSAAN LNIGLINPAA PVYQAFDPRL SNPMSQLGMA ETTYPQRPGQ 300 IECDYYMKTG ICKFGERCKF HHPIDRSAPS QQTVKLTPAG LPRREGAVIC PYYLKTGTCK 360 YGPTCKFDHP PPGEVLEMAK SQTNGGDAKD NENVSASA

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MFFSRHLTDT TSAAASATSF RFPSSASSDV DIAPPGVPSR IPSSTSHLFS QPSPWFSSPS  60
LDLKRSSSQA LYHPTILGIQ NTIGQNEAWY STSPLAKRPR YESGSNLPIY PQRPGEKDCA  120
HYMLTRTCKF GESCKFDHPI WVPEGGIPDW KEVPDVTNET LPERPGEPDC PYFVKTQRCK  180
FGPRCKFNHP KVSSESAGVS DLPDRPSEPP CAGEVDCPFY MKTGSCKYGS SCRYNHPDRT  240
AINPPVAALG PSVLASSAAN LNIGLINPAA PVYQAFDPRL SNPMSQLGMA ETTYPQRPGQ  300
IECDYYMKTG ICKFGERCKF HHPIDRSAPS QQTVKLTPAG LPRREGAVIC PYYLKTGTCK  360
YGPTCKFDHP PPGEVLEMAK SQTNGGDAKD NENVSASA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-145	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW08106