PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW10309

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

LSD

Protein Properties

Length: 142aa MW: 14735.1 Da PI: 7.9529

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW10309	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.1	6e-13	25	49	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV Ca+C++V OIW10309 25 CSGCRNLLLYPVGATSVYCAVCNAV 49 ************************9 PP
2	zf-LSD1	46.8	4.7e-15	64	88	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV OIW10309 64 CGGCHTLLMYIRGATSVQCSCCHTV 88 ************************9 PP
3	zf-LSD1	41.9	1.6e-13	102	126	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V OIW10309 102 CGNCRMLLMYQYGARSVKCAVCNFV 126 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence
MPVPLAPYPT PPAPAANGAQ SQLVCSGCRN LLLYPVGATS VYCAVCNAVT AVPPPGTEMA 60 QLVCGGCHTL LMYIRGATSV QCSCCHTVNL ALEANQVAHV NCGNCRMLLM YQYGARSVKC 120 AVCNFVTSVG ASGSTNEQKF ST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-79	LSD family protein

Link Out ? help Back to Top
Ensembl	OIW10309