PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW10671

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 253aa MW: 27480.2 Da PI: 7.3728

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW10671	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.9	2.2e-10	73	97	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ OIW10671 73 FKTKLCCKFRA-GTCPYVTNCNFAHS 97 69*******.***********8 PP
2	zf-CCCH	20.2	1.1e-06	143	168	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F+H+ OIW10671 143 YKGRHCKKFYTEEGCPYGDSCTFMHD 168 78888********************7 PP
3	zf-CCCH	42.4	1.1e-13	219	244	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OIW10671 219 WKTRICNKWELTGYCPFGNKCHFAHG 244 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MDQTRDSNVV QIITGDENWS SSGDQSVWAT EDDYRFFNNS NDAESTPKRS RNSQDATASS 60 SNNRSKAIGK MFFKTKLCCK FRAGTCPYVT NCNFAHSIEE LRRPPMNWQE IVAAHEEEKS 120 VPAREEFQIP SLSGYSGETQ RSYKGRHCKK FYTEEGCPYG DSCTFMHDEN SRNRESVAIS 180 LGPGGYGGGG GSGAGVGGGA GSGGGGGGSG SLNLKPSNWK TRICNKWELT GYCPFGNKCH 240 FAHGAAVVMH CEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	5e-93	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW10671