PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW12085

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C2H2

Protein Properties

Length: 505aa MW: 55682.3 Da PI: 8.3663

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW12085	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C k F r nL+ H r H OIW12085 79 FICEICEKGFQRDQNLQLHKRGH 101 89******************988 PP
2	zf-C2H2	12.5	0.00045	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + OIW12085 156 WKCEKCSKRYAVQSDWKAHSKIC 178 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MEKGLVVDEN MSNLTSASSE ISASSGSRSN TVSLYSQYSS TSTDQEPLPK KKRSLPGHPD 60 PEAEVIALSP KSLIATNRFI CEICEKGFQR DQNLQLHKRG HNLPWKLKQR NSKEPLRKKV 120 YVCPEPTCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT 180 REYKCDCGTL FSRRDSFITH RAFCDALAQE SAVANVTTMN PLLSSHTQLL HSHDFQAPSL 240 VKREQGLFNI PTSEIPPWLV GEPIHSQVFK PLDFSLTPLL PTHYENPNPT TVLPSFQPNI 300 TTPSLMQKAS SQMGATVTKT APSTAILRPH LLQQQGHVHE CTTTGYSSSF MASSSREEIS 360 TVFSHGLTAP YGNKAAMTSA NTIGTDQESS LFHDMMGGGG GSSGTVHNAS GFDNSSFEEA 420 MRGMFNNPPR DDHSNFEELV SKSAQSQFGN KSNKGVGVSA NGEMTRDFLS LGAFSQRDFF 480 NISGLDHLDS SSYGKQNHNQ APWQG

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MEKGLVVDEN MSNLTSASSE ISASSGSRSN TVSLYSQYSS TSTDQEPLPK KKRSLPGHPD  60
PEAEVIALSP KSLIATNRFI CEICEKGFQR DQNLQLHKRG HNLPWKLKQR NSKEPLRKKV  120
YVCPEPTCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT  180
REYKCDCGTL FSRRDSFITH RAFCDALAQE SAVANVTTMN PLLSSHTQLL HSHDFQAPSL  240
VKREQGLFNI PTSEIPPWLV GEPIHSQVFK PLDFSLTPLL PTHYENPNPT TVLPSFQPNI  300
TTPSLMQKAS SQMGATVTKT APSTAILRPH LLQQQGHVHE CTTTGYSSSF MASSSREEIS  360
TVFSHGLTAP YGNKAAMTSA NTIGTDQESS LFHDMMGGGG GSSGTVHNAS GFDNSSFEEA  420
MRGMFNNPPR DDHSNFEELV SKSAQSQFGN KSNKGVGVSA NGEMTRDFLS LGAFSQRDFF  480
NISGLDHLDS SSYGKQNHNQ APWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	119	KLKQRNSKEPLRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIW12085