PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW12724

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C2H2

Protein Properties

Length: 620aa MW: 67310.9 Da PI: 9.5151

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW12724	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H OIW12724 66 FICEVCNKGFQREQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	11.8	0.00076	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ OIW12724 142 WKCDKCSKKYAVQSDWKAHSKTC 164 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MAASSSSASL FGFREEDQNQ MNQQHSSSAT PAAPPQKKKR NQPGTPNPDA EVIALSPKTL 60 MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EPRRKVYLCP EPTCVHHDPS 120 RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAQESVRQ PPNLSTGIGS TSHLYGSNNS NMALALSQVT PQMSNMQDHF 240 NNEQRSVVPT DILGLGGNTG RTGHFDHILH PSLQAGSSSF KPSQKTMQNS AVSFFMAADN 300 SNQNYHHHDQ SQQQGMVQQN KDPFQGLMHL SHDGVNHHHN SSSSPGGSAN FFNHPFLSNN 360 TSNNSSNNSF SEHFNNANGN VGGGNEGINL FSTGNPMVGG GGHHQQTMTS SAPSLFSTSL 420 QSNNSAANTH HMSATALLQK VAQMSAISSN STNSLLKSFG SSISSSCGSK AEQHRQIHVP 480 PPPPPPSSAN YNNIFGGNES SNNNLQDLMN SFAASGNTSI FEHGGSVGLT GFEPYDHNSN 540 RREQPKLHGV NIGSSGSDDR LTRDFLGVGQ IVRNMSGGSG GLVSQREQHG FKLSTTLETE 600 RNNNAVPSRQ TFGGGGGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MAASSSSASL FGFREEDQNQ MNQQHSSSAT PAAPPQKKKR NQPGTPNPDA EVIALSPKTL  60
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EPRRKVYLCP EPTCVHHDPS  120
RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAQESVRQ PPNLSTGIGS TSHLYGSNNS NMALALSQVT PQMSNMQDHF  240
NNEQRSVVPT DILGLGGNTG RTGHFDHILH PSLQAGSSSF KPSQKTMQNS AVSFFMAADN  300
SNQNYHHHDQ SQQQGMVQQN KDPFQGLMHL SHDGVNHHHN SSSSPGGSAN FFNHPFLSNN  360
TSNNSSNNSF SEHFNNANGN VGGGNEGINL FSTGNPMVGG GGHHQQTMTS SAPSLFSTSL  420
QSNNSAANTH HMSATALLQK VAQMSAISSN STNSLLKSFG SSISSSCGSK AEQHRQIHVP  480
PPPPPPSSAN YNNIFGGNES SNNNLQDLMN SFAASGNTSI FEHGGSVGLT GFEPYDHNSN  540
RREQPKLHGV NIGSSGSDDR LTRDFLGVGQ IVRNMSGGSG GLVSQREQHG FKLSTTLETE  600
RNNNAVPSRQ TFGGGGGNFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-107	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIW12724