PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW12806

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

RAV

Protein Properties

Length: 701aa MW: 77441.8 Da PI: 8.1444

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW12806	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.4e-10	194	219	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + G Ck+Gd+C+FaHg+ OIW12806 194 KTRLCSKYNSAGGCKFGDKCHFAHGE 219 8***********************96 PP
2	AP2	26.2	2e-08	393	439	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++kGV ++g W A+I+ + +r++lg+f +++eAa a++ a kl+ OIW12806 393 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSASVKLR 439 789996.566899**999......44******99******988887 PP
3	B3	82.7	3.5e-26	516	610	1	84
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsdv+k++rlv+pkk+a ++ +++ +++++++d rsW+++++y+k+s+++v+t+GW++Fvk+++Lk++D++ F++ OIW12806 516 FQKELTPSDVGKLNRLVIPKKHAVTYfpyvcgiaeakNNDIDVDIEVIFYDNLMRSWKFRYCYWKSSQSFVFTRGWNRFVKDKKLKAKDTIAFYV 610 99***************************9987763333367899********************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MDKCDITDIV IEMQRIIRPE GSIIVRDHID VLVKVEKIVN QMSTSGCPFG EGCHFLHYVP 60 GGIKAISQVI NVGNSPAFPQ GGRNPVAPPS FPDGSSPPTV KTRLCSKCTV IGHILLNLIV 120 PLTSAYTPVN NEYTHYTSGC PFGEGCHFLH YVPGGIKAIS QVINVGNSPA FPQGGRNPVA 180 PPSFPDGSSP PTVKTRLCSK YNSAGGCKFG DKCHFAHGEW ELGKPTAPSY EDPRGFGQMQ 240 GNRIGGRVEL PPQGHGAAAS FGASATAKIS INASLAGAVI GKNGVNSKQI CRITGAKLSV 300 RDHGSDPNLR NIELEGSFDQ IKQASAMVHE LILNVSSAAS GPPMKNFTSQ TSAPANNFKT 360 KMCENFAKDS NAMNFAIDAA KRVRYEENAR FQKFKGVVPQ QNGHWGAQIY ANHQRIWLGT 420 FKSEKEAAMA YDSASVKLRS GESHRNFPWN DQTVQEPQFQ SLYSTEAVLS MIKDGIYPSK 480 FATFLRTQTQ GDIVSNKCEN IRMKIHEENL SCTLLFQKEL TPSDVGKLNR LVIPKKHAVT 540 YFPYVCGIAE AKNNDIDVDI EVIFYDNLMR SWKFRYCYWK SSQSFVFTRG WNRFVKDKKL 600 KAKDTIAFYV CEPVNLRKGG EAFSLIDIIY YNDDHERKQC FEVKGDAEQG LRNMLTLSDE 660 EEDEKDEDIG QETKDMKDLD ALNSPNNSAQ KGLRLFGVCI N

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MDKCDITDIV IEMQRIIRPE GSIIVRDHID VLVKVEKIVN QMSTSGCPFG EGCHFLHYVP  60
GGIKAISQVI NVGNSPAFPQ GGRNPVAPPS FPDGSSPPTV KTRLCSKCTV IGHILLNLIV  120
PLTSAYTPVN NEYTHYTSGC PFGEGCHFLH YVPGGIKAIS QVINVGNSPA FPQGGRNPVA  180
PPSFPDGSSP PTVKTRLCSK YNSAGGCKFG DKCHFAHGEW ELGKPTAPSY EDPRGFGQMQ  240
GNRIGGRVEL PPQGHGAAAS FGASATAKIS INASLAGAVI GKNGVNSKQI CRITGAKLSV  300
RDHGSDPNLR NIELEGSFDQ IKQASAMVHE LILNVSSAAS GPPMKNFTSQ TSAPANNFKT  360
KMCENFAKDS NAMNFAIDAA KRVRYEENAR FQKFKGVVPQ QNGHWGAQIY ANHQRIWLGT  420
FKSEKEAAMA YDSASVKLRS GESHRNFPWN DQTVQEPQFQ SLYSTEAVLS MIKDGIYPSK  480
FATFLRTQTQ GDIVSNKCEN IRMKIHEENL SCTLLFQKEL TPSDVGKLNR LVIPKKHAVT  540
YFPYVCGIAE AKNNDIDVDI EVIFYDNLMR SWKFRYCYWK SSQSFVFTRG WNRFVKDKKL  600
KAKDTIAFYV CEPVNLRKGG EAFSLIDIIY YNDDHERKQC FEVKGDAEQG LRNMLTLSDE  660
EEDEKDEDIG QETKDMKDLD ALNSPNNSAQ KGLRLFGVCI N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	2e-95	RAV family protein

Link Out ? help Back to Top
Ensembl	OIW12806