PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW13940

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 389aa MW: 41922.3 Da PI: 7.4402

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW13940	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.8	1.6e-12	56	80	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C yG+rC+F+H+p OIW13940 56 EADCMYYLRTGVCGYGSRCRFNHPP 80 689********************97 PP
2	zf-CCCH	37.9	3e-12	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ OIW13940 100 QPVCQYYMRTGSCKFGPSCKYHHPK 124 689********************96 PP
3	zf-CCCH	36.2	1e-11	145	170	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ OIW13940 145 GEKECSYYVKTGQCKFGSTCKFHHPQ 170 7899********************97 PP
4	zf-CCCH	40.4	5e-13	312	337	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG+Ck+G++C+++H+p OIW13940 312 DQPECQYYMRTGECKFGSSCRYHHPP 337 689*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MERFARSTEG SHSDPSPEWT GPAAETGLEG SMWQLGLGGD GGGGGGEESY PLRPSEADCM 60 YYLRTGVCGY GSRCRFNHPP DCVVVIEAAR TGDFPERVGQ PVCQYYMRTG SCKFGPSCKY 120 HHPKEGGGTA NPVSLNYYGY PLRPGEKECS YYVKTGQCKF GSTCKFHHPQ PAGIQIPPLP 180 PPVPQVSHLS MPVPSPLYPT VPPPSGHSPQ QFGLLVARPP LLPGSYVQSP YGPVLLSPSM 240 VPYSGWAPYQ ATATSPVLPS STPSNVGSAQ FYGITQLPSS AGAYAGPYQP SDSLIGPSSS 300 SQKEHSLPER PDQPECQYYM RTGECKFGSS CRYHHPPDMS ASKATVTLSP AGLPLRPERR 360 SLYGKIFSHP IPLSEDGLLP VPFFSYMFC

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MERFARSTEG SHSDPSPEWT GPAAETGLEG SMWQLGLGGD GGGGGGEESY PLRPSEADCM  60
YYLRTGVCGY GSRCRFNHPP DCVVVIEAAR TGDFPERVGQ PVCQYYMRTG SCKFGPSCKY  120
HHPKEGGGTA NPVSLNYYGY PLRPGEKECS YYVKTGQCKF GSTCKFHHPQ PAGIQIPPLP  180
PPVPQVSHLS MPVPSPLYPT VPPPSGHSPQ QFGLLVARPP LLPGSYVQSP YGPVLLSPSM  240
VPYSGWAPYQ ATATSPVLPS STPSNVGSAQ FYGITQLPSS AGAYAGPYQP SDSLIGPSSS  300
SQKEHSLPER PDQPECQYYM RTGECKFGSS CRYHHPPDMS ASKATVTLSP AGLPLRPERR  360
SLYGKIFSHP IPLSEDGLLP VPFFSYMFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-116	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW13940