PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW16230

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 408aa MW: 44650.5 Da PI: 7.4123

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW16230	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.9e-09	54	79	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+y ++C+++H+ OIW16230 54 PGEPDCLYYLRTGMCSYRGNCRYNHP 79 5789*********************8 PP
2	zf-CCCH	37.9	2.9e-12	102	126	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ OIW16230 102 EPDCEYFLKTGTCKYGSTCKYHHPK 126 789********************96 PP
3	zf-CCCH	37.7	3.4e-12	149	171	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ OIW16230 149 SCPYYMRTGSCKFGLACKFHHPQ 171 6********************97 PP
4	zf-CCCH	30.5	6.2e-10	280	304	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f+ tG CkyG CkF+H++ OIW16230 280 QPECKYFMSTGSCKYGFDCKFHHPK 304 689********************96 PP
5	zf-CCCH	33.2	8.9e-11	321	346	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++CkF H+ OIW16230 321 PGHAICSYYRLYGICKFGPTCKFDHP 346 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MPENREPLRN AASNHSGDNI EGGLDFYEAI GRLKINGNRD IDAAAQSTPL PERPGEPDCL 60 YYLRTGMCSY RGNCRYNHPA NVLLLDFQGT HYGEELPERI GEPDCEYFLK TGTCKYGSTC 120 KYHHPKDRKG AAPISFNSLG LPMRQEEKSC PYYMRTGSCK FGLACKFHHP QIGVSPVAGS 180 PTSAILPASG LPYVGGFSGW QLPRMSYLSG QGIQCYVPPF LSSPQGIIPA QNWNTYMGST 240 SSTMSTAFLG SNFVYDSINL GGSLLGGQII SPTLPERLDQ PECKYFMSTG SCKYGFDCKF 300 HHPKERIAQS FMNPLGLPVR PGHAICSYYR LYGICKFGPT CKFDHPVLTT PQNYGMTTSP 360 TSPVIDTSLI SSPMGLSTVQ LAETSPSKLS TTDKLQHSDT KAAEDSSE

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MPENREPLRN AASNHSGDNI EGGLDFYEAI GRLKINGNRD IDAAAQSTPL PERPGEPDCL  60
YYLRTGMCSY RGNCRYNHPA NVLLLDFQGT HYGEELPERI GEPDCEYFLK TGTCKYGSTC  120
KYHHPKDRKG AAPISFNSLG LPMRQEEKSC PYYMRTGSCK FGLACKFHHP QIGVSPVAGS  180
PTSAILPASG LPYVGGFSGW QLPRMSYLSG QGIQCYVPPF LSSPQGIIPA QNWNTYMGST  240
SSTMSTAFLG SNFVYDSINL GGSLLGGQII SPTLPERLDQ PECKYFMSTG SCKYGFDCKF  300
HHPKERIAQS FMNPLGLPVR PGHAICSYYR LYGICKFGPT CKFDHPVLTT PQNYGMTTSP  360
TSPVIDTSLI SSPMGLSTVQ LAETSPSKLS TTDKLQHSDT KAAEDSSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-101	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW16230