PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW17414

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 419aa MW: 45335.3 Da PI: 8.9321

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW17414	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.6	2.8e-10	49	72	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG+rC+++H++ OIW17414 49 PNCVYYMRTGFCGYGGRCRYNHPR 72 78********************96 PP
2	zf-CCCH	40.8	3.8e-13	93	117	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OIW17414 93 EPPCQYYLKTGTCKFGASCKFHHPK 117 79*********************96 PP
3	zf-CCCH	36.8	6.4e-12	138	163	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ OIW17414 138 GEKECSYYLKTGQCKFGITCKFHHPQ 163 7899********************97 PP
4	zf-CCCH	38.2	2.5e-12	294	320	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Ck+G C+F+H++ OIW17414 294 PGEPECQYFLRTGDCKFGLACRFNHPR 320 5799*********************96 PP
5	zf-CCCH	28.9	2e-09	339	363	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++ Ck+G+ CkF H+ OIW17414 339 GVQPCAFYLQNNNCKFGSACKFDHP 363 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MELYNRNPSR TGSNQIEWHS PGTKTGLEES MWQLKLSSVD SYPERVGAPN CVYYMRTGFC 60 GYGGRCRYNH PRDRAAVAAA VRATGEYPER VGEPPCQYYL KTGTCKFGAS CKFHHPKHGG 120 GSLSQAPLNI YGCPLRPGEK ECSYYLKTGQ CKFGITCKFH HPQPADTSLP ASAPQFYQQA 180 QSPTVPLPDQ YGGASTSLRV ARPPILPGSY IQGAYGPVLL SPGVVPFPGW SPYSAPVSPV 240 LSPGAQPAVG ATSLYGVTQL NSSTSAFARP YTPLPSSSGP SGSNQKEQVF PERPGEPECQ 300 YFLRTGDCKF GLACRFNHPR DRVVAQPLLN PIGLPLRPGV QPCAFYLQNN NCKFGSACKF 360 DHPWGPVRYS TSTSSLIDMP VTTYPVGSLL STLAPSLTSS ALRPESLSGS KLESFTTRI

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MELYNRNPSR TGSNQIEWHS PGTKTGLEES MWQLKLSSVD SYPERVGAPN CVYYMRTGFC  60
GYGGRCRYNH PRDRAAVAAA VRATGEYPER VGEPPCQYYL KTGTCKFGAS CKFHHPKHGG  120
GSLSQAPLNI YGCPLRPGEK ECSYYLKTGQ CKFGITCKFH HPQPADTSLP ASAPQFYQQA  180
QSPTVPLPDQ YGGASTSLRV ARPPILPGSY IQGAYGPVLL SPGVVPFPGW SPYSAPVSPV  240
LSPGAQPAVG ATSLYGVTQL NSSTSAFARP YTPLPSSSGP SGSNQKEQVF PERPGEPECQ  300
YFLRTGDCKF GLACRFNHPR DRVVAQPLLN PIGLPLRPGV QPCAFYLQNN NCKFGSACKF  360
DHPWGPVRYS TSTSSLIDMP VTTYPVGSLL STLAPSLTSS ALRPESLSGS KLESFTTRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW17414