PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW19584

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 463aa MW: 49037.7 Da PI: 8.3581

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW19584	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.8	1e-09	27	53	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+++G+C y +rC+F+H++ OIW19584 27 PGEADCIYFLKNGFCGYASRCRFNHPR 53 57899********************96 PP
2	zf-CCCH	31.2	3.7e-10	79	98	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C++++rtG Ck+G++Ck++H OIW19584 79 CQYYMRTGSCKFGSSCKYHH 98 ******************** PP
3	zf-CCCH	33.9	5.4e-11	122	146	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G +CkF+H++ OIW19584 122 EKECSYYVKTGQCKFGTTCKFHHPQ 146 689********************97 PP
4	zf-CCCH	36.1	1.1e-11	285	309	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG Ck+G++C+++H+ OIW19584 285 DQPECQYYLKTGDCKFGPSCRYHHP 309 689*********************8 PP
5	zf-CCCH	28.3	2.9e-09	333	356	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ + G Ck+G+ CkF H++ OIW19584 333 SVCTHYTQHGVCKFGPACKFDHPM 356 68********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MERYGRSSDE GYQESSWQGS GSYPQRPGEA DCIYFLKNGF CGYASRCRFN HPRDRARVVT 60 GAARSGSGEH PERVGQHVCQ YYMRTGSCKF GSSCKYHHTR QEAGIAAPVS LNYYGYPLRT 120 GEKECSYYVK TGQCKFGTTC KFHHPQPVGV QITAPPPVPP LSPMPVPSPL YPNVQPPSGS 180 SSQQYGVVVA RPPLLSGSLV QGPYGPIVVS PTMVPFSGWG PYQDPATSPV FPSTTLSNVG 240 STQFYGIMQL PSPQTAYAGP YQPSGSLIGP SGSSQKENSL PERPDQPECQ YYLKTGDCKF 300 GPSCRYHHPA DMSASKANVI LSPMGLPLRP GASVCTHYTQ HGVCKFGPAC KFDHPMGSLS 360 YSPSASSLAD MPVAPYPVGS SFGALAPSSS SSELRPELVS GSSNEPASSR MSSSMSTSTG 420 SVGLTSSTGG PISHSGTQPS VQNSSSLATI DATNSTTVSY TSS

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MERYGRSSDE GYQESSWQGS GSYPQRPGEA DCIYFLKNGF CGYASRCRFN HPRDRARVVT  60
GAARSGSGEH PERVGQHVCQ YYMRTGSCKF GSSCKYHHTR QEAGIAAPVS LNYYGYPLRT  120
GEKECSYYVK TGQCKFGTTC KFHHPQPVGV QITAPPPVPP LSPMPVPSPL YPNVQPPSGS  180
SSQQYGVVVA RPPLLSGSLV QGPYGPIVVS PTMVPFSGWG PYQDPATSPV FPSTTLSNVG  240
STQFYGIMQL PSPQTAYAGP YQPSGSLIGP SGSSQKENSL PERPDQPECQ YYLKTGDCKF  300
GPSCRYHHPA DMSASKANVI LSPMGLPLRP GASVCTHYTQ HGVCKFGPAC KFDHPMGSLS  360
YSPSASSLAD MPVAPYPVGS SFGALAPSSS SSELRPELVS GSSNEPASSR MSSSMSTSTG  420
SVGLTSSTGG PISHSGTQPS VQNSSSLATI DATNSTTVSY TSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-118	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW19584