PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW20721

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

M-type_MADS

Protein Properties

Length: 223aa MW: 25730.7 Da PI: 9.6193

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW20721	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.8	3.7e-15	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s+r+ ++ kR+n ++KK +E+S+LC+++++ i+++++ OIW20721 11 IANDSKRKESYKKRKNSLIKKTNEISTLCGIDACAIVYGQN 51 89*************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MARKKVNLSY IANDSKRKES YKKRKNSLIK KTNEISTLCG IDACAIVYGQ NEPQPEVWPS 60 HLGVQRVLQK FGRMSQMEQS KKMMNQETFL KQSIIKAKEQ LKKQKNENRK KEMALFMFNC 120 LSIGTLANTV NMADLNDLLW MIDQTLKEIE QKQTQEEPKE AILMTATGID ALNWEKVPMD 180 GHIQNMTQTN VNAMQKQNLL MDSVNAGWNE MFQFGDFNPQ NGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVNLSYIANDSKRKESYKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-46	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIW20721