PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW20815

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 488aa MW: 51442.6 Da PI: 8.2584

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW20815	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.9	1.5e-12	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG C yG+rC+F+H+p OIW20815 54 PGEADCMYYLRTGVCGYGSRCRFNHPP 80 57899********************97 PP
2	zf-CCCH	38.9	1.4e-12	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG CkyG++Ck++H++ OIW20815 100 QPVCQYYMRTGSCKYGPSCKYHHPK 124 689********************96 PP
3	zf-CCCH	35.8	1.4e-11	145	170	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ OIW20815 145 GEKECSYYVKTGQCKFGSTCKFHHPQ 170 7899********************97 PP
4	zf-CCCH	37.4	4.3e-12	311	336	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f++tG+Ck+G++C+++H++ OIW20815 311 DQPECQYFLKTGECKFGPSCRYHHPQ 336 689*********************97 PP
5	zf-CCCH	33.1	9.7e-11	358	381	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ++a+ G Ck+G+ CkF H+ OIW20815 358 AAPCTHYAQRGVCKFGPDCKFDHP 381 589********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MERFARSNEG SRSDPSPEWT GTGAGTGLEG SMWQLGLGGG DGGGGGEESY PLRPGEADCM 60 YYLRTGVCGY GSRCRFNHPP DFGVVIRASR TGEFPERVGQ PVCQYYMRTG SCKYGPSCKY 120 HHPKEGGGTA NPVSLNYYGY PLRPGEKECS YYVKTGQCKF GSTCKFHHPQ PTVVQIPPLP 180 PPVPQVPHLS VPMPSPLYPT VQLPSGPSQQ FGVLVARPPL LSGSFVQSPY GPMVLSPAMV 240 PYSGWDPYQA MATSPVLPSS TPSNVGSAQL YGITQIAPSS AAYTGPYQPS VSSVGPSSSS 300 QKEYSLPERP DQPECQYFLK TGECKFGPSC RYHHPQAMNA LKATVTLSPA GLPLRPGAAP 360 CTHYAQRGVC KFGPDCKFDH PVASLSYSPS ASSLADMPVA PYPVGSSIGT LAPSSSSSEL 420 RPDLTSRSKE PVSFRVSSSL STSTGSVGLT LSTGEPVSQS RTQPSAQSSN PLAAPSTATS 480 GNVSHTSS

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MERFARSNEG SRSDPSPEWT GTGAGTGLEG SMWQLGLGGG DGGGGGEESY PLRPGEADCM  60
YYLRTGVCGY GSRCRFNHPP DFGVVIRASR TGEFPERVGQ PVCQYYMRTG SCKYGPSCKY  120
HHPKEGGGTA NPVSLNYYGY PLRPGEKECS YYVKTGQCKF GSTCKFHHPQ PTVVQIPPLP  180
PPVPQVPHLS VPMPSPLYPT VQLPSGPSQQ FGVLVARPPL LSGSFVQSPY GPMVLSPAMV  240
PYSGWDPYQA MATSPVLPSS TPSNVGSAQL YGITQIAPSS AAYTGPYQPS VSSVGPSSSS  300
QKEYSLPERP DQPECQYFLK TGECKFGPSC RYHHPQAMNA LKATVTLSPA GLPLRPGAAP  360
CTHYAQRGVC KFGPDCKFDH PVASLSYSPS ASSLADMPVA PYPVGSSIGT LAPSSSSSEL  420
RPDLTSRSKE PVSFRVSSSL STSTGSVGLT LSTGEPVSQS RTQPSAQSSN PLAAPSTATS  480
GNVSHTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-138	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW20815