PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO49340
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HB-other
Protein Properties Length: 385aa    MW: 43191.9 Da    PI: 6.9771
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO49340genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.6e-082322454
              S--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRak 54
              y+s+++r+eL+ +lgLt rq ++WF  r  k
  OMO49340  2 YLSEATRAELSVQLGLTSRQLQMWFYHRQLK 32
              9************************999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MYLSEATRAE LSVQLGLTSR QLQMWFYHRQ LKDSKAPSEK RQKKDSASLA HVVGIAGEGM  60
KAGEAGNEHG SSGSSMFSHE LELRRGVPRP GMAVPRYHEV PHSMAELELR AIAFVELQLG  120
ASPAVQQKQP GQPFETKIYE RLATKAVKAV HEYQFLLEQP TVKTETHERV APSYYYGSPR  180
DGPDARVSSS YAGHSSAHGN EEVPSGYRFP SQMPNLNLLP QQSGQEHPLP TASREYDNVS  240
RKNSLPNVAL AANIGAHPIP ALEIPFLTSD RRVSLYEDVF RMERKRKAER MRQKEELRKE  300
KEASRIKVAN ERAIARKLAK ELMELIEDER LELMELAASS KGLPSTLSLD FEILQNLDAF  360
RDNLCVPAQD SAIEEIFLNP TMEGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.19e-28HB-other family protein