PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO49425

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 654aa MW: 74739 Da PI: 8.4818

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO49425	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	470	511	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++WT+eE ell ++ +++++g +W+ +++++g+gR+ +++ OMO49425 470 KPWTKEEIELLRKGMQKYPKGtsrRWEVVSEYIGTGRSVEEI 511 69***********************************99876 PP
2	Myb_DNA-binding	28	4.9e-09	597	641	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + lv+a k ++++ +W+++a+ ++ g+t +qck ++ OMO49425 597 VWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKFA 641 6******************************.******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MIASDQKTPR HQNPPQPPPQ QAKELVDGQP LYVSSNCLPV KALKYEPAGH AFHFAALKLL 60 GCEEDDTAEV DDQNVSNDKE RVYMPSSDSY SSKGKKKSGG DKQQDHYALL GLSHLRYLAT 120 EDQIRKSYRE AALRHHPDKL AALLLAEETE AAKQAKKDEI ENHFKSIQEA YEVLTDPVKR 180 RIYDSTDEFD DEIPTECAPQ EFFKVFGPAF LRNGRWSVTQ PIPTLGDENT PLKDVDNFYN 240 FWYSFKSWRE FPHADEYDLE QAESRDHKRW MERQNAKLTE KARKEEYARV RTLVDNAYKR 300 DPRILRRKEE EKAEKQRKKE AKVRAKQLQE EEAARAAEEE KRRKEEEGKR AAEAALQHKK 360 MKEKEKKLLR KERTRLRTLS APALSQHLLD LSEDDVESLC MSLGIEQLRS VCDKMENKEI 420 LEQAKIIREA RGYNDNLEEK KLDEKNSSQP NGTVESNGSV LLNSFEKKEK PWTKEEIELL 480 RKGMQKYPKG TSRRWEVVSE YIGTGRSVEE ILKATKTVLL QKPDSAKAFD SFLEKRKPAQ 540 SIASPLSTRE EVDGVSKPSG AESSAVKTGS PEDPGKIANN PVEVSANGIS SSSEQDVWSA 600 VQERALVQAL KTFPKETSQR WERVAAAVPG KTVNQCKKKF ALLKENFRSK KSTT

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MIASDQKTPR HQNPPQPPPQ QAKELVDGQP LYVSSNCLPV KALKYEPAGH AFHFAALKLL  60
GCEEDDTAEV DDQNVSNDKE RVYMPSSDSY SSKGKKKSGG DKQQDHYALL GLSHLRYLAT  120
EDQIRKSYRE AALRHHPDKL AALLLAEETE AAKQAKKDEI ENHFKSIQEA YEVLTDPVKR  180
RIYDSTDEFD DEIPTECAPQ EFFKVFGPAF LRNGRWSVTQ PIPTLGDENT PLKDVDNFYN  240
FWYSFKSWRE FPHADEYDLE QAESRDHKRW MERQNAKLTE KARKEEYARV RTLVDNAYKR  300
DPRILRRKEE EKAEKQRKKE AKVRAKQLQE EEAARAAEEE KRRKEEEGKR AAEAALQHKK  360
MKEKEKKLLR KERTRLRTLS APALSQHLLD LSEDDVESLC MSLGIEQLRS VCDKMENKEI  420
LEQAKIIREA RGYNDNLEEK KLDEKNSSQP NGTVESNGSV LLNSFEKKEK PWTKEEIELL  480
RKGMQKYPKG TSRRWEVVSE YIGTGRSVEE ILKATKTVLL QKPDSAKAFD SFLEKRKPAQ  540
SIASPLSTRE EVDGVSKPSG AESSAVKTGS PEDPGKIANN PVEVSANGIS SSSEQDVWSA  600
VQERALVQAL KTFPKETSQR WERVAAAVPG KTVNQCKKKF ALLKENFRSK KSTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	364	KRRKEEEGKRAAEAALQHKKMKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO49425