PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO49500

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 291aa MW: 33352.3 Da PI: 8.4903

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO49500	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	128	147	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ OMO49500 128 FACSICSKTFNRYNNMQMHM 147 78*****************9 PP
2	zf-C2H2	16.3	2.7e-05	212	234	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ OMO49500 212 FMCRKCGKTFAVKGDWRTHEKNC 234 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MSTTILKLPV VSFQHQQQQE QESVQETIQC LPLLSRLTEN KPVKEEDVGI MGKEMSFGVK 60 EEKVEKVTVS LHIGLPNSAI EDPVVENKMI FKEEEPMKKS FHGFNSFNTE SRFWIPTPAQ 120 ILVGPMQFAC SICSKTFNRY NNMQMHMWGH GSEYRKGPDS LKGTQPAAML RLPCYCCAQG 180 CKNNINHPRA KPLKDFRTLQ THYKRKHGAK PFMCRKCGKT FAVKGDWRTH EKNCGKLWYC 240 TCGSDFKHKR SLKDHIRSFG KGHSPHPSLE GFEDDKEMEC ITGSEEDEFA Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-117	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO49500