PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO49513

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bZIP

Protein Properties

Length: 485aa MW: 54369 Da PI: 7.5871

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO49513	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.7e-10	209	250	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L OMO49513 209 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQEL 250 6889*************************8766666655544 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MANHRVGETG LTDSGPSNHH HHIPYAHVLH GMNAPTSFLH QEGAAFDFGE LEEAIVLQGV 60 KFRNDNEAKP PLFTTPRPAA TLDMFPSWPM RFHQTPRQGS SKSGDEISTE DSESAVNTLS 120 SNKTENNQLE PESPISKKAS SFDHKPLQQQ QQQHLQHLQQ LQQQQIDQMA SDNSRTGTTS 180 QQQNQSASAA KTTPQEKRRG STSEKQLDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR 240 IKLTQLEQEL QRARSQGLFL GGCGGAAGNI SSGAAIFDME YSRWLEDDQR HMSELRTGLH 300 AHLSDSDLRV IVDGYISHYD EIFRLKGVAA KSDVFHLITG MWTTPAERCF LWMGGFRPSE 360 LIKMLISQLD PLTEQQVMGI YSLQHSSTQA EEALSQGLEQ LQQSLIDTIA GGPVIDGMQQ 420 MAVALAKLAN LESFIRQADN LRQQTLHQLP RILTVRQAAR CFLVIGEYYA RLRALSSLWS 480 SRPRE

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MANHRVGETG LTDSGPSNHH HHIPYAHVLH GMNAPTSFLH QEGAAFDFGE LEEAIVLQGV  60
KFRNDNEAKP PLFTTPRPAA TLDMFPSWPM RFHQTPRQGS SKSGDEISTE DSESAVNTLS  120
SNKTENNQLE PESPISKKAS SFDHKPLQQQ QQQHLQHLQQ LQQQQIDQMA SDNSRTGTTS  180
QQQNQSASAA KTTPQEKRRG STSEKQLDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR  240
IKLTQLEQEL QRARSQGLFL GGCGGAAGNI SSGAAIFDME YSRWLEDDQR HMSELRTGLH  300
AHLSDSDLRV IVDGYISHYD EIFRLKGVAA KSDVFHLITG MWTTPAERCF LWMGGFRPSE  360
LIKMLISQLD PLTEQQVMGI YSLQHSSTQA EEALSQGLEQ LQQSLIDTIA GGPVIDGMQQ  420
MAVALAKLAN LESFIRQADN LRQQTLHQLP RILTVRQAAR CFLVIGEYYA RLRALSSLWS  480
SRPRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-170	bZIP family protein

Link Out ? help Back to Top
Ensembl	OMO49513