PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO49530

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 220aa MW: 25330.5 Da PI: 8.7189

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO49530	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	63	84	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk F + L H+r H OMO49530 63 TCGYCGKGFQSDRALGGHLRIH 84 7**********99999999998 PP
2	zf-C2H2	12.7	0.00038	119	141	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C C++sFs+ +L +H r+ H OMO49530 119 GCFGCHESFSSMQLLCQHVRNfH 141 699*****************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MFDPQENHDP DPTYSSTETK SAYMDASMGF WVQESLKTKK VKPLEVETPV LDVEDKNTLK 60 IKTCGYCGKG FQSDRALGGH LRIHGGNHRP KPKSKSVTVK KNKKRAREEH EEKDKFEFGC 120 FGCHESFSSM QLLCQHVRNF HRPNPNGFKP IPEPDRQNKI EEEKKGNQGI DEVVSLWYDQ 180 NQNQKQEESS DDLVKHHVST AGKRRRKVEL PVLPIWITTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	7e-07	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO49530