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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO49543 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | NF-YB | ||||||||
| Protein Properties | Length: 214aa MW: 24733.8 Da PI: 4.3377 | ||||||||
| Description | NF-YB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YB | 45.5 | 1.8e-14 | 8 | 103 | 5 | 95 |
NF-YB 5 drflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
++lP a v r++k l + + k+a e + fi ++++ a+d c++ kr+t+n++d++ al ++ f ++v+plk+ l+++r+ ++
OMO49543 8 AEELPKAIVRRVVKDKLSDcspnyDINVHKEALLAFSESARIFIHYLSATANDVCKESKRQTMNAEDVFKALEEIEFSEFVKPLKASLAEFRKKNA 103
568999********999642221245789999999*********************************************************8765 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 214 aa Download sequence |
MEKVISEAEE LPKAIVRRVV KDKLSDCSPN YDINVHKEAL LAFSESARIF IHYLSATAND 60 VCKESKRQTM NAEDVFKALE EIEFSEFVKP LKASLAEFRK KNAGKKAGSA KEKEVKKKRK 120 VEESSVKNGG KSKQKKRNKN EEKEEEEEEE EESESSSKKG GKSKQKKSDK NEEEEEEEVE 180 EEEKEEEEEE EEEEEKEEEE EEEEENEDDS NGSE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 99 | 120 | RKKNAGKKAGSAKEKEVKKKRK |
| 2 | 100 | 120 | KKNAGKKAGSAKEKEVKKKRK |
| 3 | 111 | 120 | KEKEVKKKRK |
| 4 | 116 | 121 | KKKRKV |
| 5 | 116 | 139 | KKKRKVEESSVKNGGKSKQKKRNK |
| 6 | 117 | 140 | KKKRKVEESSVKNGGKSKQKKRNK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G27470.1 | 4e-47 | NF-YB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO49543 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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