PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO49644
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 221aa    MW: 25276.7 Da    PI: 4.8273
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO49644genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM514.7e-16131621128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.............kvkaeekew...yfFskrdkkyatgkrknratksgyWk 84 
               lppGfrF+Pt++e+++++ ++ +e+  l++   i+ +d+y++ePw+L  k             k+k+e+ke+       k+++k++t+++ +r++  g Wk
  OMO49644  13 LPPGFRFKPTQQEILKYFVRPAIETGFLPF--PITCCDLYTSEPWNLFdKraadcfwiytplkKLKNENKEIgmsIATQKKKRKTKTKENIERTAGCGSWK 111
               79************************9999..79*************6346899999999998677777766533455555566667778889999***** PP

       NAM  85 atgkdkevlskkgel........vglkktLvfykgrapkgektdWvmheyrl 128
               ++   k++++  g+l           k+ L +      k +   W+mhey+l
  OMO49644 112 EKTL-KDIKDCAGKLlghgryylYDAKEGLGLGLDYGDKDHDDLWFMHEYTL 162
               7654.777776666622223333444444444445555666899******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MLRYSVDIGE GSLPPGFRFK PTQQEILKYF VRPAIETGFL PFPITCCDLY TSEPWNLFDK  60
RAADCFWIYT PLKKLKNENK EIGMSIATQK KKRKTKTKEN IERTAGCGSW KEKTLKDIKD  120
CAGKLLGHGR YYLYDAKEGL GLGLDYGDKD HDDLWFMHEY TLPKDEGPIP KKPRLENASA  180
SGASSLNDDF ASLDDDDEFL EYLYTVLTDS DETQILECLP D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.13e-09NAC family protein