PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO49683

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 339aa MW: 38133.4 Da PI: 6.7881

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO49683	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde+l++++++ G g+W+t +++ g+ R++k+c++rw +yl OMO49683 28 RGPWTPEEDEILANYIRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 75 89****************************99**********97 PP
2	Myb_DNA-binding	48.2	2.6e-15	81	126	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l OMO49683 81 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 126 678889**************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MRNPSLVTSS TTTSKSTTPC CSKVGIKRGP WTPEEDEILA NYIRREGEGR WRTLPKRAGL 60 LRCGKSCRLR WMNYLRPSVK RGRIAPDEED LILRLHRLLG NRWSLIAGRI PGRTDNEIKN 120 YWNTHLSKKL ISQGIDPRTH KPLNNYLVSH SPPSHSHQVT HDPIPNSNLN LPISNSSELG 180 EKNVTITTMN TANYQGFAPT SNLDYYQQYD DQKNLQQINV DNGVGNYQNP DDATATLIME 240 QPAAGSSLQG NEGNYIENCN EDMFSFSFLD SLMNDNLFGN DQLQQPNTNA LPEQGSAAMA 300 STQSFSTHGN IWEAEIMSSM LAFGNDQLNS FNTHQQYQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-75	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO49683