PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO49927
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 89aa    MW: 10039.4 Da    PI: 5.809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO49927genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-0815561455
              HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
              d+iN  + +L+ llP++ ++++ ++s   +L ++++YI+ Lq
  OMO49927 15 DDINALILKLQPLLPQLNQGRNARVSATKVLNETCNYIRRLQ 56
              79**************88***********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    
MSNPGSRAAN KITDDDINAL ILKLQPLLPQ LNQGRNARVS ATKVLNETCN YIRRLQSEVD  60
DLSERLSQCL HSMDITSFEA ETLRNLLQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-17bHLH family protein