PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50060

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 337aa MW: 37955.1 Da PI: 7.1436

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50060	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	76	129	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ OMO50060 76 PRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 129 8****************************************************7 PP
2	Myb_DNA-binding	51.5	2.3e-16	77	128	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++ +v+av++lGg t+k++ + m+ kg++ ++ks++q+y+ OMO50060 77 RLRWTPDLHLCFVHAVERLGGQdraTPKLVLQLMNiKGLSIAHVKSHLQMYR 128 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MMKMASDSSF EDSRSSQNNK KKGGIEEDEE EEENEDKVNC KSRNGESSSN SSVELENEKK 60 STASGSVRQY NRSKTPRLRW TPDLHLCFVH AVERLGGQDR ATPKLVLQLM NIKGLSIAHV 120 KSHLQMYRSR KTDDPNQDMT EQGLIFEGGD HHIFKLSQLP MLHSFKNQRY GSHNNKGASA 180 LDIARRGIYT SLTERIFGSY KKDNSHSCSI GETASGRRNL GHHGCWQTQE IRPSKMGSQD 240 KQKRKILMDS NGEEEEEDID LNLSLKITTL TKQNYKDTIE SDDEKGTCSF EGVVDSNLSL 300 SLASSSSKVV GNDDEYQYGS RRKHARTIPI STLDLTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	6e-50	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO50060