PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO50071
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 365aa    MW: 39472.4 Da    PI: 7.107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO50071genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1876125255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f taeeAa+a+++a+  l+g
  OMO50071  76 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEEAARAYDRAAIILYG 125
               59****999.**********954...5**********************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MDLVIQDQSP VSHHLPQETT AKTTTTTPPP PSDDAKSPSA DSDSSLINNN NNNHNPPPPG  60
SRKCKGKGGP DNNKFRYRGV RQRSWGKWVA EIREPRKRTR KWLGTFSTAE EAARAYDRAA  120
IILYGSKAQL NLQPSIPSSS SSSSSSSSRG GGGSSSSNTQ TLRPLLPRPS GFAFSFTSSS  180
SSIALNNILP AHHHHLQASL MAATGVSSSS RYIPYGVSVY QPNILNPAVV YPNMIQNSNN  240
TQQAFHQMVQ QQAELVNPCH VDPTETITSY SNPNCTQIVQ QQQQQQQHHQ GSTLYEDINS  300
LVGSVGSSLS LSGQTSVGPV VPDPAGFTVG PGSPSVWPLT NDDEYPPACI WDYADPDPNF  360
FDLDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.14e-33ERF family protein