PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50074

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 248aa MW: 28617.2 Da PI: 9.3922

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50074	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.6	3.4e-13	20	103	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea ++ rl+rg+l++++W+ev++++ + +++ +qCk++++ l+k+yk ++ s++p+f++++ OMO50074 20 CWSEGATATLVEAWGDRYIRLNRGNLRQKDWQEVADAVnsrlNGAKSRKTDVQCKNRIDTLKKKYKLERSKPPP------SKWPFFKRID 103 7***********************************98766667788*************99887775......58***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MNLRGPPHSS SGGGGGREDC WSEGATATLV EAWGDRYIRL NRGNLRQKDW QEVADAVNSR 60 LNGAKSRKTD VQCKNRIDTL KKKYKLERSK PPPSKWPFFK RIDSLIGGNA SSNKKHHSLT 120 FTITPKAKSF LKGPKLEESS FEEEEEEEDG DDDEIRKEHR VEDVGLSDGA ACRELARAIL 180 KFGEIYERIE SSKQQQMMEL EKQRMEFTKD LEFQRMNMFV DAQLEMQKSK RQRNLTRSGF 240 HQKDTKFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	233	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	2e-63	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO50074