PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO50075
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 172aa    MW: 19233 Da    PI: 8.1118
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO50075genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.21.8e-40111101100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l+++lal++++
  OMO50075  11 SCAACKLLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRRMIELQHDLALARAR 110
               6**********************************************************************************************99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MRTHEPRSSS SCAACKLLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRRMIEL QHDLALARAR LARYAATTTS  120
PAAIISNDRL SMAPFGEFPA ACGGFIDSFY QTSSEVLNQE ANMYDFSQIP YI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-61LBD family protein