PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO50117
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 108aa    MW: 12702.7 Da    PI: 8.9807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO50117genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-171196384
              EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE CS
        B3  3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkl 84
               +++++   +++r+v+p + + ++    +    ++ +++  d +g+ W++++i r+ +g+     ++++GW +Fv++n L++gD++vFkl
  OMO50117 11 RKTVRPTEITNHRFVVPTEAMWAFllqvD---SNKLDIQALDVTGKLWSFRYITRG-PGShhpqPYFSRGWMKFVRDNSLQAGDIIVFKL 96
              5566889999**************97432...34569***************7644.3443677899*********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MEEEKSVEIF RKTVRPTEIT NHRFVVPTEA MWAFLLQVDS NKLDIQALDV TGKLWSFRYI  60
TRGPGSHHPQ PYFSRGWMKF VRDNSLQAGD IIVFKLRPFA DPIYFIEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.15e-12RAV family protein