PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO50388
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 302aa    MW: 34473.6 Da    PI: 9.2
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO50388genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM836.1e-26862133128
       NAM   3 pGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                GfrF+Ptdeel+ e L++k v+g+ ++++++i e +iy++eP+dL+  ++v+ ++ke y+  kr++ +      + ++ +g Wkat + k++ s+ +  +
  OMO50388  86 TGFRFNPTDEELL-EILNQKvVSGNVVPAFDFIVERNIYESEPQDLQwvESVALNSKEKYYLLKRESDS------REVAGRGWWKATSHVKTISSAnNAGV 179
               7************.5566661566669999****************96336666888999999987743......447889************99866778 PP

       NAM 100 vglkktLvfy.....kgrapkgektdWvmheyrl 128
               vg k+ L+f+     + +++++ ktdW+mhey l
  OMO50388 180 VGYKRPLTFHrfkdnQRKRKDAIKTDWIMHEYGL 213
               **********7776556777788*********76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MVRVTRDQRS RAFLTTAGRD PRATQPWAGR DQIATHHGAG RDQIATHHGA DHDQIATHTM  60
AGRDPLIVKA AAGLRKRAEK MFPALTGFRF NPTDEELLEI LNQKVVSGNV VPAFDFIVER  120
NIYESEPQDL QWVESVALNS KEKYYLLKRE SDSREVAGRG WWKATSHVKT ISSANNAGVV  180
GYKRPLTFHR FKDNQRKRKD AIKTDWIMHE YGLSLHSIQS DWRLCKIKYK GKEKHKEEET  240
IMENSDAAAG GSSSSINQEQ PLPLNSSESE YPSSSLINMQ PLPSYHQHFP DQLWSNWDSN  300
WH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.14e-18NAC family protein