PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50470

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Nin-like

Protein Properties

Length: 937aa MW: 104210 Da PI: 6.5054

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50470	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	618	669	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ OMO50470 618 AEKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 669 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence
MEDAIFSPGT ILGAPPDSAM DFNYMDELLL DGCWLETTEG SDFLNLSPSR SNAFFDPSFM 60 WPTSESYGGE LGASPSHIHN QGENQRSLFP GNSHMNGTQG QSLINPHFTN NMADVDRSHN 120 LHGDCITDGS EQSRRWYIAP RTNPGPATSV TQRLIQALTY IKDLAKEKDV LVQLWVPVHR 180 GGKRVLTTSE QPFSLAPNCQ RLASYRNISV KYQFSAEEDS KETVGLPGRV FLSKVPEWTP 240 DVRFFRKDEY PRVNDAQQHD VRGTFALPVF EQGSKTCLGV IEVVMTTEKI KIRPELESVC 300 KALEAVNLRS SIASSSQNIK ACTNPYQAAL PEIKEVLRCA CETHKLPLAQ TWVSCMQQGK 360 EGCRHSSENY VHCVSTVDDA CYIGDPDIQG FHEACSEHHL LKGQGVAGGA FVTNQPCFSA 420 DITSFKKTEY PLAHHARMFN LHAAVAIRLR CIHTGKADFV LEFFLPSDCR DPEGQKKMLN 480 SLSIIIQQVC CSLRVVTDKE LEEETDLAVS EVIAPSDGIP NREEVSEEHY THRSPNCSRE 540 NSSWTTCLSE VQQSSNAALE LRKEKARGIL NEKLSEVKQD QERINLRESV ECGDSTFNEI 600 SFSSAAMGKT GEKRRTKAEK TITLQVLRQY FAGSLKDAAK SIGVCPTTLK RICRQHGIQR 660 WPSRKIKKVG HSLQKLQHVI NSVQGASGAI HISAFYTNFP ELASPKLSGT STLSTSRLND 720 QPTQTIIQPE GGNFLPQAAN SNSPSSSYSQ SSSSSQCFSS GTRQPSTFDI SGSEDVILGE 780 NSGDGEMKRV RSDAELHASS QGGPKQFPRS QSLRSLNEQL VSDSLQPMPK NTSQIAQDLE 840 AQRVKVTYGD ENIRFRLQSK WRFKDLLHEI SRRFSIDDIN RFDLKYLDDD SEWVLLTCDA 900 DLEECLEVCR SCKGNTIKLS LQVSHQHWDR SSGSSGP

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence

MEDAIFSPGT ILGAPPDSAM DFNYMDELLL DGCWLETTEG SDFLNLSPSR SNAFFDPSFM  60
WPTSESYGGE LGASPSHIHN QGENQRSLFP GNSHMNGTQG QSLINPHFTN NMADVDRSHN  120
LHGDCITDGS EQSRRWYIAP RTNPGPATSV TQRLIQALTY IKDLAKEKDV LVQLWVPVHR  180
GGKRVLTTSE QPFSLAPNCQ RLASYRNISV KYQFSAEEDS KETVGLPGRV FLSKVPEWTP  240
DVRFFRKDEY PRVNDAQQHD VRGTFALPVF EQGSKTCLGV IEVVMTTEKI KIRPELESVC  300
KALEAVNLRS SIASSSQNIK ACTNPYQAAL PEIKEVLRCA CETHKLPLAQ TWVSCMQQGK  360
EGCRHSSENY VHCVSTVDDA CYIGDPDIQG FHEACSEHHL LKGQGVAGGA FVTNQPCFSA  420
DITSFKKTEY PLAHHARMFN LHAAVAIRLR CIHTGKADFV LEFFLPSDCR DPEGQKKMLN  480
SLSIIIQQVC CSLRVVTDKE LEEETDLAVS EVIAPSDGIP NREEVSEEHY THRSPNCSRE  540
NSSWTTCLSE VQQSSNAALE LRKEKARGIL NEKLSEVKQD QERINLRESV ECGDSTFNEI  600
SFSSAAMGKT GEKRRTKAEK TITLQVLRQY FAGSLKDAAK SIGVCPTTLK RICRQHGIQR  660
WPSRKIKKVG HSLQKLQHVI NSVQGASGAI HISAFYTNFP ELASPKLSGT STLSTSRLND  720
QPTQTIIQPE GGNFLPQAAN SNSPSSSYSQ SSSSSQCFSS GTRQPSTFDI SGSEDVILGE  780
NSGDGEMKRV RSDAELHASS QGGPKQFPRS QSLRSLNEQL VSDSLQPMPK NTSQIAQDLE  840
AQRVKVTYGD ENIRFRLQSK WRFKDLLHEI SRRFSIDDIN RFDLKYLDDD SEWVLLTCDA  900
DLEECLEVCR SCKGNTIKLS LQVSHQHWDR SSGSSGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OMO50470