PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO50735
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 219aa    MW: 24381.6 Da    PI: 9.4552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO50735genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-143582254
              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
              +++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++v+++++L
  OMO50735 35 CKSHKEAERRRRQRINAHLSTLRSLLPST-----TKTDKASLLAEVVHHVREL 82
              789*************************9.....8***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MFPMKSLVGF ENINPVNLTD GEDSILSERK PTDACKSHKE AERRRRQRIN AHLSTLRSLL  60
PSTTKTDKAS LLAEVVHHVR ELRRQVEDVA RREGGGLRSN NQTELESWPF PGECDETALS  120
FCDKEGKLLK ATVCCEDRPG LNRDLSRAIR SVQARVVRAE MTTVGGRTKS VVVMQWNGDE  180
EKIGPFKRAL KDVAENRVSG LAHGAGSKRA RVFGSDNSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.14e-25bHLH family protein