PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50844

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 534aa MW: 60056.2 Da PI: 4.6315

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50844	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	187	230	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L OMO50844 187 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 230 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MEMNYDQQFL EELLALRRDS TWDTIPTEMN EIFSSSSSSG CWNFDAFDDY NSASAAAFHP 60 NSFCQNDFSA PAFEQVDFNN YNFNEIYSPF GDEFCAAPQP QVTDSSNNTF DTPPFPVQED 120 YCLNMVEEEE SGFLADELHK LDVQAATCKA EPIHESPELA PPFTIGTCLD RKNSRARKLE 180 GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERIKTLQEE 240 IESGSDELNM AHIFKDVKPN EILVRNTPKF EVERRNVDTR IEICCTGKPG LLLSTVTTLE 300 ALGLEIEQCV ISCFNDFAMQ ASCSEDLEQR TIMSSEDIKQ ALFRNAGYGG RFQSSDIMKQ 360 RPHLMTTESQ NVIETMLVVL KDKKKSSKLN IIEQNREIIW NCKGVLNADS TKNDIGSSDF 420 SQGPSFSFPR VDSKPAAEAA NRGGAVDNGE VIKEEIAEQS VKSGREYIVE KNQETVSQFK 480 QNVAGGSSKN SSASEIQNYI GPAGLDAGLE KVEFTFNAGT NRKEKGIKWK KEAR

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MEMNYDQQFL EELLALRRDS TWDTIPTEMN EIFSSSSSSG CWNFDAFDDY NSASAAAFHP  60
NSFCQNDFSA PAFEQVDFNN YNFNEIYSPF GDEFCAAPQP QVTDSSNNTF DTPPFPVQED  120
YCLNMVEEEE SGFLADELHK LDVQAATCKA EPIHESPELA PPFTIGTCLD RKNSRARKLE  180
GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERIKTLQEE  240
IESGSDELNM AHIFKDVKPN EILVRNTPKF EVERRNVDTR IEICCTGKPG LLLSTVTTLE  300
ALGLEIEQCV ISCFNDFAMQ ASCSEDLEQR TIMSSEDIKQ ALFRNAGYGG RFQSSDIMKQ  360
RPHLMTTESQ NVIETMLVVL KDKKKSSKLN IIEQNREIIW NCKGVLNADS TKNDIGSSDF  420
SQGPSFSFPR VDSKPAAEAA NRGGAVDNGE VIKEEIAEQS VKSGREYIVE KNQETVSQFK  480
QNVAGGSSKN SSASEIQNYI GPAGLDAGLE KVEFTFNAGT NRKEKGIKWK KEAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	197	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-83	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO50844