PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50898

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 391aa MW: 43691.7 Da PI: 7.0897

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50898	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	4e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl OMO50898 14 KGPWSPEEDAKLKAYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.3	3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd+++ + G++ W+ Ia+ ++ gRt++++k++w++ OMO50898 69 GGFSEEEDKIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDKIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQSRRG NNNTLKQEMI NRGNNNGDSN SSLIFPHHSS NQISSYWPEL PAMAAAAVAP 180 IAIPYSDDHE EQRNIIDSQA SMRRLLIKLG GRFSDDDHQH HVVNDDGMST IIHHQTFPND 240 PSILSLSPSQ QQLYEQTATA HLPSSSSSSP MEALNNNMGT THDHQFVNSQ YIDGANLHML 300 RAGQGIDIQQ EMGYSSSNPQ RVDGMEFLYG EEMVNSIRAL SSCETINGSW ATDHSIQVCP 360 TVASEYGVSI QQAGIHQQQE YGFSELRYPG A

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDKIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQSRRG NNNTLKQEMI NRGNNNGDSN SSLIFPHHSS NQISSYWPEL PAMAAAAVAP  180
IAIPYSDDHE EQRNIIDSQA SMRRLLIKLG GRFSDDDHQH HVVNDDGMST IIHHQTFPND  240
PSILSLSPSQ QQLYEQTATA HLPSSSSSSP MEALNNNMGT THDHQFVNSQ YIDGANLHML  300
RAGQGIDIQQ EMGYSSSNPQ RVDGMEFLYG EEMVNSIRAL SSCETINGSW ATDHSIQVCP  360
TVASEYGVSI QQAGIHQQQE YGFSELRYPG A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	1e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO50898