PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50911

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 427aa MW: 46302.3 Da PI: 5.4584

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50911	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.2e-10	276	324	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq OMO50911 276 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 324 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MASGDNDDVG FKHRHESLIN CPSSRMNTNP LSDKVDGMAM SSISMYTKPS NASDPFFASG 60 WDPIISLSQG ESLGGSSMVS HGEFANSHYP LLMENQGISG ASHFSQYQSD PSFVELVPKL 120 QGFGSGNLSE MVNSFGLPQC SQIANSRFPP NYALNAEGGN ERGSTNSTQS RDDNQISEEG 180 GLVTSPNGKR RKRVPESSSP LGSYQNVDEE PQKDPSGESS DVPKEQDEKK QKTEQNTGAN 240 SRGKQVAKQA KDTPQTGEAA KENYIHVRAR RGQATNSHSL AERVRREKIS ERMRLLQELV 300 PGCNKITGKA VMLDEIINYV QSLQQQVEFL SMKLATVNPE LNIDLERLLS KDILHSRGGS 360 AAILGFGPGI NTSHPFSPGI FPGTMPGIPS TNPQFPPMPQ TALDNEFQNL FQMGFDSSSA 420 MDSLGPS

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MASGDNDDVG FKHRHESLIN CPSSRMNTNP LSDKVDGMAM SSISMYTKPS NASDPFFASG  60
WDPIISLSQG ESLGGSSMVS HGEFANSHYP LLMENQGISG ASHFSQYQSD PSFVELVPKL  120
QGFGSGNLSE MVNSFGLPQC SQIANSRFPP NYALNAEGGN ERGSTNSTQS RDDNQISEEG  180
GLVTSPNGKR RKRVPESSSP LGSYQNVDEE PQKDPSGESS DVPKEQDEKK QKTEQNTGAN  240
SRGKQVAKQA KDTPQTGEAA KENYIHVRAR RGQATNSHSL AERVRREKIS ERMRLLQELV  300
PGCNKITGKA VMLDEIINYV QSLQQQVEFL SMKLATVNPE LNIDLERLLS KDILHSRGGS  360
AAILGFGPGI NTSHPFSPGI FPGTMPGIPS TNPQFPPMPQ TALDNEFQNL FQMGFDSSSA  420
MDSLGPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-85	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO50911