PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO51153

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-YC

Protein Properties

Length: 276aa MW: 31132.6 Da PI: 4.9175

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO51153	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.7	1.3e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++dedv +i+ +P l+ska elf+ +l r++ + +tl+ ++++v++ ++fdfl ++v + OMO51153 6 DTRFPAARIKKIMQSDEDVGKIAMAVPLLVSKALELFLQDLCDRAYEITLTRGAKTLNSFHLKQCVEEFNVFDFLRETVGK 86 5789***********************************************************************999865 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MKRKLDTRFP AARIKKIMQS DEDVGKIAMA VPLLVSKALE LFLQDLCDRA YEITLTRGAK 60 TLNSFHLKQC VEEFNVFDFL RETVGKVPNL RGSDAAGEDH SVPKRRKVVD HDDKSSDDEL 120 KRSRMQEAGC ITSCGRGRGR GRGRGRGRGS RSGERQTTAR CEKFEDDPDV SHSQEKHTLS 180 LERLNEGVEP DELKKHNTAG KNIEAPVRNF DLNVDLDENG DSSTSVAPAS PTTDNIPEKQ 240 EEYPDWPLSE IEKMVIDPIE FSNLNRVIDD EDYDDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR
3	138	147	RGRGRGRGRG
4	138	148	RGRGRGRGRGR
5	140	149	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	1e-62	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OMO51153