PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO51164

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 1619aa MW: 182517 Da PI: 8.7262

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO51164	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.5e-06	1314	1336	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k F++k +L H+r+H OMO51164 1314 FSCAVCNKEFRSKKSLFGHMRNH 1336 89********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1619 aa Download sequence
MSKAYDRLEW NLLEAIMLKM GYVAQWVDMI MQCVRLVSFS VVVNGDVTDE FRPERGLRQG 60 DLLSPYLFLM CTEGLSALLS KGKVDGLLSG VSASQRGPWV SHLFFVDDSL LFGKANSDES 120 SLRMMDSTLL EVAIEFFTKK HTEASIDLDD FDADQRMLRQ IWRAIVPPKI RFFSWCLFHA 180 LLPAMDNLFL QGRMRHVLDA ALAKTHAVLR ALSWVKEMGF HTVMIEGDAL YIIQKLNSPH 240 VDFSQIGVLL DDAKLLKESL DCYFFHYLMG SSVAMADSIN LDQIKEADTQ SRRAWNSILA 300 EVFQLRSVSP IDPGKPVLRV LAEVYELTLG RDGLVKIIKI DSNLYVIQFP NEITRTWVLE 360 NEPWHIQNKP LFIKRWEPGG VGLDFDMRKF PLWITLKHVP LELYTKLGLS FIASGLGNPL 420 YMDRATALKQ KLSIAKVCVE VDLEVVIELK DGTSVSIEIE VPWRPPKCCT CNVFGHANCS 480 VVPKQPGRQR WTPKKNLDIA QQTVSIDTTG DIADAGNISN TGGLAYTPII ADISDIAKVD 540 NGMSLKPTVK MEVQVGAFTI LTSPATVQKS LMVRNIEQNT PIGCSTAQQS DVQKGTGRKF 600 TATEKGKANA SKQSSNRYAT LQTKANIIDE EHIDDVDRLT DIVNEIDKAT FTRKPRAALA 660 RVKEVVMQCI TCHITYNSKK FYFSAVYGAN NEGDRRNLWS YLLQTATTIG ADPWLVVGDF 720 NVISRIKESS EFNGTQIAGC DISDFNSCIS QLDLVDHAYS GPLFTWWNKR DEGSISKKLD 780 RALVNFSWLE AYQNSIVEFL APEVSDHCAI LVKLDSQNFS PPKPFRFFNF WTKHDNFMAT 840 VKQSWPQPVY GRDPMLRLFM KLKRLKPVLK QFNRDNFRQL SDKVNQKRGE VAQLQTSLLQ 900 SASSQLVDEL KQISDKAIPF FQSLLGKKDG AIGGCSIDLL TDILQDTVPV NLRQSLSAPV 960 TTAEIKSAIF SISGDKAPGP NGFNSYFFKS TWSIVQKDVE EAILYFFQTG HLLQAFNSTA 1020 ITLVPKYSGL QLNCEKSELF TAGVSSDIVQ KMVQLSHFKV GSLWIAWIYA YILKGRSIME 1080 IPSLQRYSWN IKKLLHLRNK VDQFIQVGGD WTLPGYVYKT SLVYDHLRSK NPRVPWQRDH 1140 IFFTCEYSKK LCVKILRACN LTKAAGDWQS ELQWKNHCFV WVFALCLMEN QADQNLEKES 1200 VSMETSSDLA ASKRSKVFLK LKISNKPLKH CGQHICPVCS RGFSSGKALG GHIRIHTKGI 1260 KNSRHRKLSK LQPRNYIHRA KAKKRISKKT GLPPKAAADD DDLNNKDDDE DEKFSCAVCN 1320 KEFRSKKSLF GHMRNHPDRK WRGIKPPPNS EKNSCCSSVS ENEEAVQVVD QISATETDEA 1380 SADLFKSLPK WSYATKPISD EIPEAAYCLM KLARGQSFDL AQLMLHKGPS EVKKRCHFDG 1440 KGKGKLKIEQ DIQERLPCKR ADSYRSGEEK KMGKPINYEN SIENKRTKLN CAEDATEVLK 1500 KNRKFDQFHK YPMMKADELE EGNSSGRQRG GKIFPSGFCP NKNPSPRGLF GAETAEGKHL 1560 YSKKQIPGTS HQAEAAEASH DHVQVCSPKL LDFDLNEPYV ALDAEPTPTP TPTPSQYSD

Sequence ? help Back to Top

Protein Sequence Length: 1619 aa Download sequence

MSKAYDRLEW NLLEAIMLKM GYVAQWVDMI MQCVRLVSFS VVVNGDVTDE FRPERGLRQG  60
DLLSPYLFLM CTEGLSALLS KGKVDGLLSG VSASQRGPWV SHLFFVDDSL LFGKANSDES  120
SLRMMDSTLL EVAIEFFTKK HTEASIDLDD FDADQRMLRQ IWRAIVPPKI RFFSWCLFHA  180
LLPAMDNLFL QGRMRHVLDA ALAKTHAVLR ALSWVKEMGF HTVMIEGDAL YIIQKLNSPH  240
VDFSQIGVLL DDAKLLKESL DCYFFHYLMG SSVAMADSIN LDQIKEADTQ SRRAWNSILA  300
EVFQLRSVSP IDPGKPVLRV LAEVYELTLG RDGLVKIIKI DSNLYVIQFP NEITRTWVLE  360
NEPWHIQNKP LFIKRWEPGG VGLDFDMRKF PLWITLKHVP LELYTKLGLS FIASGLGNPL  420
YMDRATALKQ KLSIAKVCVE VDLEVVIELK DGTSVSIEIE VPWRPPKCCT CNVFGHANCS  480
VVPKQPGRQR WTPKKNLDIA QQTVSIDTTG DIADAGNISN TGGLAYTPII ADISDIAKVD  540
NGMSLKPTVK MEVQVGAFTI LTSPATVQKS LMVRNIEQNT PIGCSTAQQS DVQKGTGRKF  600
TATEKGKANA SKQSSNRYAT LQTKANIIDE EHIDDVDRLT DIVNEIDKAT FTRKPRAALA  660
RVKEVVMQCI TCHITYNSKK FYFSAVYGAN NEGDRRNLWS YLLQTATTIG ADPWLVVGDF  720
NVISRIKESS EFNGTQIAGC DISDFNSCIS QLDLVDHAYS GPLFTWWNKR DEGSISKKLD  780
RALVNFSWLE AYQNSIVEFL APEVSDHCAI LVKLDSQNFS PPKPFRFFNF WTKHDNFMAT  840
VKQSWPQPVY GRDPMLRLFM KLKRLKPVLK QFNRDNFRQL SDKVNQKRGE VAQLQTSLLQ  900
SASSQLVDEL KQISDKAIPF FQSLLGKKDG AIGGCSIDLL TDILQDTVPV NLRQSLSAPV  960
TTAEIKSAIF SISGDKAPGP NGFNSYFFKS TWSIVQKDVE EAILYFFQTG HLLQAFNSTA  1020
ITLVPKYSGL QLNCEKSELF TAGVSSDIVQ KMVQLSHFKV GSLWIAWIYA YILKGRSIME  1080
IPSLQRYSWN IKKLLHLRNK VDQFIQVGGD WTLPGYVYKT SLVYDHLRSK NPRVPWQRDH  1140
IFFTCEYSKK LCVKILRACN LTKAAGDWQS ELQWKNHCFV WVFALCLMEN QADQNLEKES  1200
VSMETSSDLA ASKRSKVFLK LKISNKPLKH CGQHICPVCS RGFSSGKALG GHIRIHTKGI  1260
KNSRHRKLSK LQPRNYIHRA KAKKRISKKT GLPPKAAADD DDLNNKDDDE DEKFSCAVCN  1320
KEFRSKKSLF GHMRNHPDRK WRGIKPPPNS EKNSCCSSVS ENEEAVQVVD QISATETDEA  1380
SADLFKSLPK WSYATKPISD EIPEAAYCLM KLARGQSFDL AQLMLHKGPS EVKKRCHFDG  1440
KGKGKLKIEQ DIQERLPCKR ADSYRSGEEK KMGKPINYEN SIENKRTKLN CAEDATEVLK  1500
KNRKFDQFHK YPMMKADELE EGNSSGRQRG GKIFPSGFCP NKNPSPRGLF GAETAEGKHL  1560
YSKKQIPGTS HQAEAAEASH DHVQVCSPKL LDFDLNEPYV ALDAEPTPTP TPTPSQYSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	1e-15	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO51164