PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO51235
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 343aa    MW: 37629.9 Da    PI: 9.8984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO51235genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.3e-16182227555
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               hn  ErrRRdriN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  OMO51235 182 HNLSERRRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 227
               9************************8.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MHGLGGLLPS APTKPTWGRS SDTLESIVHQ ATCHSPKPNF NLLHHDRIIP APNRNNPLAA  60
AAASSGGNWA ESASRLPVAP AAAATAALLK KWTRSESDHC RKFQDERSAC ASASATFCRD  120
NDTTMMTWAS HESPRSMKTM KTADEDSACH DGSENRDEDR ETRTETGRSH STSRRSRAAA  180
IHNLSERRRR DRINQKMKTL QKLVPNSSKT DKASMLDEVI EYLKQLQAQL QMMSMRSSMP  240
QMNMMMPLGM QQHLQMSLLA RMGMGLGMGM GMGMMDMNSM ARNASQPLMH PSPVTAHPSP  300
TFLPPTFVPP PMLPTRGAPQ PNSNATSNPS LPLPDPYCAF LAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERRRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-21bHLH family protein