PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO51244

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HB-other

Protein Properties

Length: 517aa MW: 57655.1 Da PI: 7.9325

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO51244	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.7e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+l+++++ ps e++++LA++++Lte+q++ WF+ rR k+k+ OMO51244 20 KKRIVKTPAQVSALEKLYKEDKFPSDEMKAQLAAQIRLTEKQISSWFCHRRLKDKR 75 89****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MEDSAEVQTE ENKVSLDANK KRIVKTPAQV SALEKLYKED KFPSDEMKAQ LAAQIRLTEK 60 QISSWFCHRR LKDKRRDDTY ANGRHDHSSG VIQDRGSGLR QDSCGSIKQG DYRNVDPREV 120 ESRRIYGQEF PAADLLYERR SHQNPYDAHM EDTSSESSLS LHDRHLSESR DSYDMQISAN 180 LTQNGASKQI NPRSTKSMSY KPSGYLKVKG EVENPAITAA KKQLGKHYRE DGPLLGIEFD 240 PLPPGAFEFP NSNPLNEPIS VGDPGQAHSP DISGVMKQPN PNIIKEVHDS KMRSQGPCME 300 GANLNTVHRS ERRDRNSHHQ LNYKSSFLCS KPFPGQNSSL DIYKGSSGKI PVINCKWSKM 360 SSEPAVERLG SDSFSDHPGP YGGKIAIEQE KPWLHDDDNH TYKASKFENL SKTSSLVHGC 420 SESLGTERGP SARMAKVEKL GGEGKPKREY PVRVKIDPTN ELRVGKRVKV EFPTPDFLVN 480 GSQARLPLLT NPTKGSSMDV PSSFSEDQTA ETSSSLD

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MEDSAEVQTE ENKVSLDANK KRIVKTPAQV SALEKLYKED KFPSDEMKAQ LAAQIRLTEK  60
QISSWFCHRR LKDKRRDDTY ANGRHDHSSG VIQDRGSGLR QDSCGSIKQG DYRNVDPREV  120
ESRRIYGQEF PAADLLYERR SHQNPYDAHM EDTSSESSLS LHDRHLSESR DSYDMQISAN  180
LTQNGASKQI NPRSTKSMSY KPSGYLKVKG EVENPAITAA KKQLGKHYRE DGPLLGIEFD  240
PLPPGAFEFP NSNPLNEPIS VGDPGQAHSP DISGVMKQPN PNIIKEVHDS KMRSQGPCME  300
GANLNTVHRS ERRDRNSHHQ LNYKSSFLCS KPFPGQNSSL DIYKGSSGKI PVINCKWSKM  360
SSEPAVERLG SDSFSDHPGP YGGKIAIEQE KPWLHDDDNH TYKASKFENL SKTSSLVHGC  420
SESLGTERGP SARMAKVEKL GGEGKPKREY PVRVKIDPTN ELRVGKRVKV EFPTPDFLVN  480
GSQARLPLLT NPTKGSSMDV PSSFSEDQTA ETSSSLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	77	RRLKDKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-82	HB-other family protein

Link Out ? help Back to Top
Ensembl	OMO51244