PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO51495

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Whirly

Protein Properties

Length: 603aa MW: 66366.8 Da PI: 8.0457

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO51495	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	176	7.8e-55	64	199	2	137
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdG 102 v+k+kaal+v + +ptf+++dsg+lkl+r+G+++l++ +a+aerkydWek+q+fals+tev++l+++++ +++effhdp++ +sn+G++ k l ++ + G OMO51495 64 VFKGKAALSVSPLLPTFSKIDSGALKLDRRGAMMLTFWPAVAERKYDWEKRQKFALSPTEVGSLISMGAADTSEFFHDPSKLSSNAGQISKKLFIKAHDAG 164 9************************************************************************************************** PP Whirly 103 sGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 G++++l+vtn+++k+ ++++vPv+ aefavl+++ OMO51495 165 NGYMISLTVTNNILKSTDRLYVPVTTAEFAVLKTA 199 *******************************97 PP
2	Whirly	176.7	4.9e-55	336	471	2	137
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdG 102 vyk+kaal+v + +ptf+++dsg+lkl+r+G+++l++ +a+aerkydWek+q+fals+tev++l+++++++++ef+hdp++ +sn+G++ k l ++ + G OMO51495 336 VYKGKAALSVSPLLPTFSKIDSGALKLDRRGAMMLTFWPAVAERKYDWEKRQKFALSPTEVGSLISMGAHDTSEFYHDPSKLSSNAGQIAKKLFIKAHDAG 436 9************************************************************************************************** PP Whirly 103 sGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 G++v+l+vtn+++k+ ++f+vPv+ aefavl+++ OMO51495 437 DGYMVSLTVTNNIQKSTDRFYVPVTTAEFAVLKTA 471 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MMKLSRSLLS RNLSSQTLVP GKWSDTGDAL WSHAFESRAA ISTSAHDFAV KGNSNASVFA 60 PYTVFKGKAA LSVSPLLPTF SKIDSGALKL DRRGAMMLTF WPAVAERKYD WEKRQKFALS 120 PTEVGSLISM GAADTSEFFH DPSKLSSNAG QISKKLFIKA HDAGNGYMIS LTVTNNILKS 180 TDRLYVPVTT AEFAVLKTAC SDVTVIHILL LEIMCRYLCE IRLSRSTCTH KHAYSEKIFC 240 CFTYFAAHFF KFDIGLLLED SGLVIRVCVA SHHWLGLVDQ SVRNLSSQTL LPGKWSDIGD 300 ALWSPAFESR AAITTSAHDF AVKGNSNARV FSPFTVYKGK AALSVSPLLP TFSKIDSGAL 360 KLDRRGAMML TFWPAVAERK YDWEKRQKFA LSPTEVGSLI SMGAHDTSEF YHDPSKLSSN 420 AGQIAKKLFI KAHDAGDGYM VSLTVTNNIQ KSTDRFYVPV TTAEFAVLKT ACSFALPHII 480 GWDWLNNRSG KGGIEGSSTK VEALSNEEEV ELRSKIEALG LEVTKVPSKS SHSLDELEIE 540 RELDRLSVKL DGVDEMISSD PQVQSLLSDT AHVWMPVITA NADERRNFTA PTISDDKPPP 600 STQ

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MMKLSRSLLS RNLSSQTLVP GKWSDTGDAL WSHAFESRAA ISTSAHDFAV KGNSNASVFA  60
PYTVFKGKAA LSVSPLLPTF SKIDSGALKL DRRGAMMLTF WPAVAERKYD WEKRQKFALS  120
PTEVGSLISM GAADTSEFFH DPSKLSSNAG QISKKLFIKA HDAGNGYMIS LTVTNNILKS  180
TDRLYVPVTT AEFAVLKTAC SDVTVIHILL LEIMCRYLCE IRLSRSTCTH KHAYSEKIFC  240
CFTYFAAHFF KFDIGLLLED SGLVIRVCVA SHHWLGLVDQ SVRNLSSQTL LPGKWSDIGD  300
ALWSPAFESR AAITTSAHDF AVKGNSNARV FSPFTVYKGK AALSVSPLLP TFSKIDSGAL  360
KLDRRGAMML TFWPAVAERK YDWEKRQKFA LSPTEVGSLI SMGAHDTSEF YHDPSKLSSN  420
AGQIAKKLFI KAHDAGDGYM VSLTVTNNIQ KSTDRFYVPV TTAEFAVLKT ACSFALPHII  480
GWDWLNNRSG KGGIEGSSTK VEALSNEEEV ELRSKIEALG LEVTKVPSKS SHSLDELEIE  540
RELDRLSVKL DGVDEMISSD PQVQSLLSDT AHVWMPVITA NADERRNFTA PTISDDKPPP  600
STQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	1e-75	Whirly family protein

Link Out ? help Back to Top
Ensembl	OMO51495