PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO51782
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 167aa    MW: 19141 Da    PI: 9.8194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO51782genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016132154123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               + C++C+ ++s++  L  H++tH
  OMO51782 132 FHCKYCSSTYSTPQALGGHQNTH 154
               78********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
QTTTVKREIH IPEIRGCTIS KEKQLISDDF AGLNNQCSTK YRERQCELEC RLLKLECAID  60
ANKKPKSIVS SPAMNPNRQE TVSVETDPQF ISLLPFFLPW IFQFQSIITS STKSRLKLLH  120
HQPPKPPATK SFHCKYCSST YSTPQALGGH QNTHKRERAA RRVDWTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.18e-10C2H2 family protein