PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO52576
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 334aa    MW: 37188.7 Da    PI: 5.2644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO52576genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.42.6e-184291255
              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
              r +h+e E+rRR++iN++f++Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  OMO52576 42 RSKHSETEQRRRSKINERFQTLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 91
              899*************************9....9*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MVKSVATSHL HQEEEDDDDY EDKGETVKVD GKGSEQKTNT NRSKHSETEQ RRRSKINERF  60
QTLRDLIPQN DQKRDKASFL LEVIEYIQFL QEKLNMYEGS YQGWNQEPTK LVPWRNHQGL  120
AESFIDHCQV MKNGTSCENN VAIPSMLANT QNSIESDLGN AAVFKALDHP PGSATSMVNV  180
QSQSNTFATH GRGGIPTQSF HESASESENA VYRPQFQWQS RECLIDAAVP NNSANELEDL  240
TIRGDTGLSS AYSQGVLNTL TQALQSSGVD ISQANISVQI DVGKRVASGL NSMASSSKEK  300
EIQYTSNQVM AQTGVHSYTE ESDQAYKRRR TGKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.13e-61bHLH family protein