PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO52578
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family G2-like
Protein Properties Length: 334aa    MW: 37541.2 Da    PI: 7.6584
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO52578genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.11.1e-29231285256
   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
               +r+ W+ eLH+rFvea++ LGG+e+AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  OMO52578 231 NRRSWSAELHSRFVEALHLLGGIEVATPKQIKEIMQVEGLTNDQVKSHLQKYRLH 285
               799**************************************************97 PP
2Myb_DNA-binding445.2e-14232283148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r +W++e++ ++v+a ++lGg    t+k I + m+ +g+t  q+ks++qky+
         OMO52578 232 RRSWSAELHSRFVEALHLLGGIevaTPKQIKEIMQvEGLTNDQVKSHLQKYR 283
                      678*****************88*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MTSASSSGFE LNLSLKPSYV PKTIANLLKD LSNVDNEADK LAVLNDYINQ LEEELNRIVP  60
IKHQFPQCML LLMEALQALR DEFVNIKNGK GSDETARGKH GSVVAIRRKH YEEEKIDKLA  120
SVEKDDCKGK SSVRSNSSHQ LWNSTNYEHK KHKSFIDFIQ APIQIPISCK GSASILPSLV  180
GNGCSSKEII GGSCSKSGSI GTNNGLYGMN LKADTLNYQP RPLTQPIWKN NRRSWSAELH  240
SRFVEALHLL GGIEVATPKQ IKEIMQVEGL TNDQVKSHLQ KYRLHSRKQS AKYRENLVNF  300
QDPWHPQMYY GDPNLSPDQD SDDHDEDNSN NPQA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-24G2-like family protein