PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO52667

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CO-like

Protein Properties

Length: 380aa MW: 41946.4 Da PI: 5.6166

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO52667	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.8	6.8e-06	20	60	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+++ + + +C+ ++ +lC C H H+ OMO52667 20 RVCDTCRSAACTVYCRADSAYLCGGCDARVHAAnrvasrHE 60 79****99***************99995555666665 PP
2	zf-B_box	32	2.5e-10	62	107	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC +C e+H+ H++vp+ OMO52667 62 VWVCEACERAPAAFLCKADAASLCTTCDAEIHSAnplarrHQRVPI 107 689***************************668999999997 PP
3	CCT	70.3	4.7e-24	311	354	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ OMO52667 311 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 354 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MLKEETNDVG SGAGGNNWAR VCDTCRSAAC TVYCRADSAY LCGGCDARVH AANRVASRHE 60 RVWVCEACER APAAFLCKAD AASLCTTCDA EIHSANPLAR RHQRVPILPI SGSLYGSSAT 120 EQGGRKMASA AETEDGFMDL EGDDTIAEED EDEAASWLLL NPRKNSTNQN NGYLFSGEVD 180 EYLDLVEYNS SVENHFPDQY NQQQQHYSVP HKGYAGDSVV PVQSGEAKDH LQQQQHQSFQ 240 FGLDYESSKA AYSYNGSISH SVSVSSVDVG IVPESTMSDI SISHARPPKG TIDLFSGPSV 300 QMPTQLTPMD REARVLRYRE KKKTRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDVEVEV 360 DQMFSTTLMT EAGYGIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MLKEETNDVG SGAGGNNWAR VCDTCRSAAC TVYCRADSAY LCGGCDARVH AANRVASRHE  60
RVWVCEACER APAAFLCKAD AASLCTTCDA EIHSANPLAR RHQRVPILPI SGSLYGSSAT  120
EQGGRKMASA AETEDGFMDL EGDDTIAEED EDEAASWLLL NPRKNSTNQN NGYLFSGEVD  180
EYLDLVEYNS SVENHFPDQY NQQQQHYSVP HKGYAGDSVV PVQSGEAKDH LQQQQHQSFQ  240
FGLDYESSKA AYSYNGSISH SVSVSSVDVG IVPESTMSDI SISHARPPKG TIDLFSGPSV  300
QMPTQLTPMD REARVLRYRE KKKTRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDVEVEV  360
DQMFSTTLMT EAGYGIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-128	CO-like family protein

Link Out ? help Back to Top
Ensembl	OMO52667