PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO52807

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 417aa MW: 45415.2 Da PI: 6.8008

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO52807	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88	8.9e-28	136	190	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ OMO52807 136 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 190 5689***************.******************************86 PP
2	Myb_DNA-binding	39.6	1.2e-12	139	188	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ ++v+av+qlG + +++I + mg +t+ ++ s++qky+ OMO52807 139 VDWTPELHRRFVQAVEQLGVDkaVPSRILELMGiDCLTRHNIASHLQKYR 188 57******************************889**********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MESFSISSEE FPDFADGNLL ESIDFDDLFV GINDGDMLPD LEMDPELLAE LPAVSGGEES 60 EMNTSSSVEK IDEDKISGSG NSGLGSSSSK GEEIVSRREE PSAAVVKTSS KDSDKGRKSS 120 AQGKNNINNN NQGKRKVKVD WTPELHRRFV QAVEQLGVDK AVPSRILELM GIDCLTRHNI 180 ASHLQKYRSH RKHLLAREAE AASWTHRRQM YGAATPAGGG KRDVNPWLGP TMGFPHMSPP 240 MHHHHQQPAH HHFRPLHVWG HPTMDQSVMH LWPKHLPHTP SPPPPAPPTW GPPPPPPPTD 300 PSYWHHHQRV PNGLTPGTPC FPQPMASTRF AAPPVPGIPP PHALYKPDPG IGVPAGQSGP 360 HPLIDFQPSK ESIDAAIGDV LSKPWLPLPL GLKPPSTDSV LGELQRQGIP KVPPSCA

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MESFSISSEE FPDFADGNLL ESIDFDDLFV GINDGDMLPD LEMDPELLAE LPAVSGGEES  60
EMNTSSSVEK IDEDKISGSG NSGLGSSSSK GEEIVSRREE PSAAVVKTSS KDSDKGRKSS  120
AQGKNNINNN NQGKRKVKVD WTPELHRRFV QAVEQLGVDK AVPSRILELM GIDCLTRHNI  180
ASHLQKYRSH RKHLLAREAE AASWTHRRQM YGAATPAGGG KRDVNPWLGP TMGFPHMSPP  240
MHHHHQQPAH HHFRPLHVWG HPTMDQSVMH LWPKHLPHTP SPPPPAPPTW GPPPPPPPTD  300
PSYWHHHQRV PNGLTPGTPC FPQPMASTRF AAPPVPGIPP PHALYKPDPG IGVPAGQSGP  360
HPLIDFQPSK ESIDAAIGDV LSKPWLPLPL GLKPPSTDSV LGELQRQGIP KVPPSCA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	7e-91	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO52807