PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO52881

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 289aa MW: 32369.4 Da PI: 6.3419

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO52881	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H OMO52881 118 FSCNYCQRKFYSSQALGGHQNAH 140 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MEQQQPPKSE PSLSETSSIV SVSNGPDFSH SQKFEATGKQ QVEEEDIDEE EEDGHNNKHL 60 VLDLSLSRKD QDQPELINLI NCFKTDSSSD EQDNNSSETD HHDIPPQGNN NETEPRVFSC 120 NYCQRKFYSS QALGGHQNAH KRERTLAKRG QRVGLAAFGH SNSRYSSLAS LPLHGSFNKS 180 LGIQVHSMIH KPSFLPSPHL YGQNGWSRRP NIDSKPAIGR HVSMENNFHV GINYAGSSTS 240 NNNGVARFET SSTKFGPSME EMGGGYWWDC VNHFKNKQDE LKLDLSLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-42	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO52881