PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO52913
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 202aa    MW: 23452.9 Da    PI: 8.5796
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO52913genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.41.8e-2637125290
      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
               fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++r++tr gCka++++k +k+gkw++t+++++HnH+l+
  OMO52913  37 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHIKFDKSGKWVITRFVKDHNHPLV 125
               9**************************************99999998****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MDTFTEGETM AVPCEGDSII EPYEGMEFES EDAAKIFYDE YARRVGFVMR VMSCRRSERD  60
GRILARRLGC NKEGYCVSIR GKFGPVRKPR PSTREGCKAM IHIKFDKSGK WVITRFVKDH  120
NHPLVVAPRE ARQTMDEKDK KIQELTAELR NKKRLCAAYQ EQLTAFMTIV EEHSSQLSKK  180
VQNVVNNLKE YESIEVELLQ HR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-113FAR1 family protein