PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53162

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 420aa MW: 47843.6 Da PI: 5.7564

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53162	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	391	409	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cg+ F +k L++H+ OMO53162 391 VCETCGEEFQSKNKLHKHL 409 6*****************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MASEKRCLYE VLGLSRDCTQ DEIRSAYKKL ALQRHPDKLV QSGISQADAT AQFQELVHAY 60 EVLSDPKERS WYDSHRSQIL FADRNATSNS PIPDLFSFFS NTVYSGYSDT GRGFYKVYSD 120 LFSKIYANEL NFAKRLGLGL DMVKEAPLMG NLESPYSQVT AFYNYWLGFS TVMDFVWVDE 180 YDVMAGPNRK SRRVMEEENK KLRRKAKREY NETEDGFFDV EEGGEDRVEV DSDDNSDEED 240 SVLEAMVSGK RNKKNAFFKN EDVVSQPEFH VKDESDDGEF MEYDNRKNRR KNRRAKNDRG 300 KKNGSEAVKS DANELESKNE EASLKDTLHV EEQPADDGNI GENDDKLGNS EKMSKQSVDR 360 KGNSKKETNT KSSSSSKGKK SKATAKHSGN VCETCGEEFQ SKNKLHKHLG DTGHASLKYR

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MASEKRCLYE VLGLSRDCTQ DEIRSAYKKL ALQRHPDKLV QSGISQADAT AQFQELVHAY  60
EVLSDPKERS WYDSHRSQIL FADRNATSNS PIPDLFSFFS NTVYSGYSDT GRGFYKVYSD  120
LFSKIYANEL NFAKRLGLGL DMVKEAPLMG NLESPYSQVT AFYNYWLGFS TVMDFVWVDE  180
YDVMAGPNRK SRRVMEEENK KLRRKAKREY NETEDGFFDV EEGGEDRVEV DSDDNSDEED  240
SVLEAMVSGK RNKKNAFFKN EDVVSQPEFH VKDESDDGEF MEYDNRKNRR KNRRAKNDRG  300
KKNGSEAVKS DANELESKNE EASLKDTLHV EEQPADDGNI GENDDKLGNS EKMSKQSVDR  360
KGNSKKETNT KSSSSSKGKK SKATAKHSGN VCETCGEEFQ SKNKLHKHLG DTGHASLKYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	208	KKLRRKAKR
2	286	294	KKLRRKAKR
3	287	292	KNRRKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-115	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO53162