PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53218

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 599aa MW: 66409.7 Da PI: 7.2026

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53218	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.3	1.3e-26	469	522	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k+r+rW peLH+ F++ave+LGG+e+AtPk+i +lm+vkgL ++hvkSHLQ R OMO53218 469 KQRIRWMPELHQLFLNAVEKLGGPERATPKNIWKLMNVKGLNMDHVKSHLQVQR 522 79*************************************************876 PP
2	Myb_DNA-binding	39.8	1e-12	473	520	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqk 46 rW +e+++l+++av++lGg+ t+k I + m+ kg+ ++ks++q OMO53218 473 RWMPELHQLFLNAVEKLGGPeraTPKNIWKLMNvKGLNMDHVKSHLQV 520 9*********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence
MENGGVEEKQ RGASYTYWVR EAKADAAPLP LPKKLNPQDI LSDQASKPAT LGSVWNKAGT 60 WEEKNLNSWA TQRIKELLQS LSSLDFSCGK AEIADITKCV GDAFLVTVRN KKCVGYTYEL 120 TLNFKGEWLL REEKKTVKGR IEIPEFSFGE LDDLQMEVQV SEEKDLLHQD KLQIVQDVKL 180 FLQPIREKLL QFEQELKDRS KTARLQNWET YKSSHHRVVQ KEPAMRSSYY ELSSVYDLLS 240 SETIGSSSAN GNSLLPDNPE AAASASAAAT AAAAASASAS ASALALVQAS ICNPVLAHDS 300 CYLPSSSHIN NKGSRLISSD SSCSKTHTQN QNQNHVGNPS SSCCVQQPIF DQLIPAAATK 360 TNIAPNPSGS LHNFTFGDQA YNMTICEDSA YANHNSLTLK EKLQLQYLSQ ELEIEINTTS 420 TNKQNPYPCL QEIYELAPQV STAPAIGLDG YTNYIPSRHQ HPDVIAANKQ RIRWMPELHQ 480 LFLNAVEKLG GPERATPKNI WKLMNVKGLN MDHVKSHLQV QRGLQLQIEQ QAQLLRKLME 540 QQKKGGSGTG SSSLSPESDN CSTHSPKRKA SQSSEPEQQC EKRHRGECST KQPPIFLVQ

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence

MENGGVEEKQ RGASYTYWVR EAKADAAPLP LPKKLNPQDI LSDQASKPAT LGSVWNKAGT  60
WEEKNLNSWA TQRIKELLQS LSSLDFSCGK AEIADITKCV GDAFLVTVRN KKCVGYTYEL  120
TLNFKGEWLL REEKKTVKGR IEIPEFSFGE LDDLQMEVQV SEEKDLLHQD KLQIVQDVKL  180
FLQPIREKLL QFEQELKDRS KTARLQNWET YKSSHHRVVQ KEPAMRSSYY ELSSVYDLLS  240
SETIGSSSAN GNSLLPDNPE AAASASAAAT AAAAASASAS ASALALVQAS ICNPVLAHDS  300
CYLPSSSHIN NKGSRLISSD SSCSKTHTQN QNQNHVGNPS SSCCVQQPIF DQLIPAAATK  360
TNIAPNPSGS LHNFTFGDQA YNMTICEDSA YANHNSLTLK EKLQLQYLSQ ELEIEINTTS  420
TNKQNPYPCL QEIYELAPQV STAPAIGLDG YTNYIPSRHQ HPDVIAANKQ RIRWMPELHQ  480
LFLNAVEKLG GPERATPKNI WKLMNVKGLN MDHVKSHLQV QRGLQLQIEQ QAQLLRKLME  540
QQKKGGSGTG SSSLSPESDN CSTHSPKRKA SQSSEPEQQC EKRHRGECST KQPPIFLVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.1	3e-23	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO53218